Eucgr.D00306 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.D00306 T334464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.D00306.1 Sox 78 147

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.728
MDP0000695104 Malus domestica MDP0000695104 N 0.697
29693.m002035 Ricinus communis 29693.m002035 N 0.691
MDP0000143506 Malus domestica MDP0000143506 N 0.688
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.683
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.683
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.683
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.683
TCM_029514 Theobroma cacao TCM_029514 N 0.683
Ca_05162 Cicer arietinum Ca_05162 N 0.663
Ca_05164 Cicer arietinum Ca_05164 N 0.663
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.659
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.659
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.659
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.658
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.658
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.652
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.651
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.650
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.647
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.644
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.637
F775_05073 Aegilops tauschii F775_05073 I 0.636
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.636
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.634
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.634
Bra021911 Brassica rapa Bra021911 N 0.632
PK22924.1 Cannabis sativa PK22924.1 N 0.632
Bo4g182600 Brassica oleracea Bo4g182600 N 0.632
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.632
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.627
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.626
Si003021m.g Setaria italica Si003021m.g N 0.625
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.623
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.623
mgf009922m Mimulus guttatus mgf009922m N 0.617
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.605
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.605
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.601
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.599
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.593
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.588
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.571
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.549
OB01G34910 Oryza brachyantha OB01G34910 I 0.535
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.525
OBART01G25720 Oryza barthii OBART01G25720 N 0.525
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.525
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.525
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.525
MDP0000170945 Malus domestica MDP0000170945 N 0.525
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.525
OS01G0666200 Oryza sativa OS01G0666200 N 0.525
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.522
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.490
MDP0000392251 Malus domestica MDP0000392251 N 0.481
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.446
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.430