Eucgr.E00847 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.E00847 T334466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.479 0.663
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.479 0.663
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E00847.1 Sox 180 248
Eucgr.E00847.1 Sox 297 363
Eucgr.E00847.1 Sox 420 488

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016416 Theobroma cacao TCM_016416 I 0.608
Cla011101 Citrullus lanatus Cla011101 I 0.595
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.586
Pm024077 Prunus mume Pm024077 I 0.586
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.584
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.579
30190.m010807 Ricinus communis 30190.m010807 I 0.578
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.576
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.571
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.562
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.557
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.552
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.550
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.548
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.547
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.529
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.518
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.515
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.507
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.507
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.507
PK10992.1 Cannabis sativa PK10992.1 I 0.500
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.499
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.493
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.489
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.484
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.483
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.483
mgf015439m Mimulus guttatus mgf015439m I 0.479
HMGB13 Arabidopsis thaliana AT4G11080 D 0.479
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.476
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.476
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.475
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.475
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.472
HMGB6 Arabidopsis thaliana AT4G23800 I 0.466
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.465
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.465
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.465
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.464
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.461
Bra035256 Brassica rapa Bra035256 I 0.460
Bo1g037180 Brassica oleracea Bo1g037180 I 0.458
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.458
Bra013731 Brassica rapa Bra013731 I 0.458
Si017040m.g Setaria italica Si017040m.g I 0.451
OB02G19930 Oryza brachyantha OB02G19930 N 0.437
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.436
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.430
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.426
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.419
MDP0000268093 Malus domestica MDP0000268093 I 0.418