Eucgr.H01676 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.H01676 T334471_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.429 0.441
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.H01676.1 Sox 6 74

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.515
PK14705.1 Cannabis sativa PK14705.1 I 0.513
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.511
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.507
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.505
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.505
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.505
TCM_034406 Theobroma cacao TCM_034406 I 0.505
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.505
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.505
30170.m014386 Ricinus communis 30170.m014386 I 0.505
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.505
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.505
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.505
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.505
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.505
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.505
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.505
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.505
TCM_042534 Theobroma cacao TCM_042534 I 0.504
MDP0000362980 Malus domestica MDP0000362980 I 0.502
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.502
Pm018913 Prunus mume Pm018913 I 0.502
MDP0000757111 Malus domestica MDP0000757111 I 0.502
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.500
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.493
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.488
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.488
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.485
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.483
Cla009093 Citrullus lanatus Cla009093 I 0.483
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.482
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.480
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.480
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.480
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.480
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.480
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.480
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.480
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.478
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.477
MDP0000275042 Malus domestica MDP0000275042 I 0.477
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.477
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.477
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.476
Bra025838 Brassica rapa Bra025838 I 0.476
HMGB3 Arabidopsis thaliana AT1G20696 I 0.476
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.476
Bo8g070350 Brassica oleracea Bo8g070350 I 0.476
Bo5g030580 Brassica oleracea Bo5g030580 I 0.476
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.476
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.476
Bo7g061420 Brassica oleracea Bo7g061420 I 0.476
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.476
Pm002934 Prunus mume Pm002934 I 0.475
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.475
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.474
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.474
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.473
TCM_000068 Theobroma cacao TCM_000068 I 0.473
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.472
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.472
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.472
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.472
Si007288m.g Setaria italica Si007288m.g I 0.472
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.468
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.467
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.467
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.467
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.465
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.465
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.465
PK11149.1 Cannabis sativa PK11149.1 I 0.465
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.465
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.465
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.464
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.462
Ca_09896 Cicer arietinum Ca_09896 I 0.461
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.461
Si031512m.g Setaria italica Si031512m.g I 0.459
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.459
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.459
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.459
mgf009330m Mimulus guttatus mgf009330m I 0.459
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.459
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.455
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.455
mgf008076m Mimulus guttatus mgf008076m I 0.453
mgf006113m Mimulus guttatus mgf006113m I 0.453
mgf016608m Mimulus guttatus mgf016608m I 0.453
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.452
29669.m000844 Ricinus communis 29669.m000844 I 0.452
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.452
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.449
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.449
Pm026798 Prunus mume Pm026798 I 0.449
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.449
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.449
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.449
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.448
mgf014518m Mimulus guttatus mgf014518m I 0.447
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.447
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.444
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.444
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.442
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.442
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.442
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.442
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.442
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.440
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.440
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.439
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.439
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.439
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.439
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.439
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.439
OBART06G28090 Oryza barthii OBART06G28090 I 0.439
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.439
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.439
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.439
OB06G35870 Oryza brachyantha OB06G35870 I 0.439
OS06G0728000 Oryza sativa OS06G0728000 I 0.439
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.439
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.439
MDP0000607529 Malus domestica MDP0000607529 I 0.438
mgf016363m Mimulus guttatus mgf016363m I 0.437
Ca_19340 Cicer arietinum Ca_19340 I 0.437
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.437
Cla018386 Citrullus lanatus Cla018386 I 0.437
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.437
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.437
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.437
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.434
Ca_10725 Cicer arietinum Ca_10725 I 0.434
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.433
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.433
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.433
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.433
F775_27510 Aegilops tauschii F775_27510 I 0.433
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.433
HMGB2 Arabidopsis thaliana AT1G20693 I 0.433
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.433
Cla023817 Citrullus lanatus Cla023817 I 0.432
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.432
PK29786.1 Cannabis sativa PK29786.1 I 0.432
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.432
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.431
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.431
TCM_021706 Theobroma cacao TCM_021706 I 0.431
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.431
OS09G0551600 Oryza sativa OS09G0551600 I 0.431
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.431
OB09G25530 Oryza brachyantha OB09G25530 I 0.431
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.431
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.431
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.431
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.430
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.429
HMG-1 Pisum sativum Q41026_PEA D 0.429
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.428
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.423
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.421
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.421
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.419