CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.J02535
(
Eucalyptus grandis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Eucgr.J02535
T334475_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.612
0.710
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.J02535.1
Sox
44
113
PKRPASAFFIFMEDFRVQYKQKHPNNKSVAAVGKAGGDKWKSMSEAEKAPFAAKAEKRKDEYNKKMNAYN
Eucgr.J02535.2
Sox
44
114
PKRPASAFFIFMEDFRVQYKQKHPNNKSVAAVGKAGGDKWKSMSEAVSKAPFAAKAEKRKDEYNKKMNAYN
Eucgr.J02535.3
Sox
44
113
PKRPASAFFIFMEDFRVQYKQKHPNNKSVAAVGKAGGDKWKSMSEAEKAPFAAKAEKRKDEYNKKMNAYN
Eucgr.J02535.4
Sox
44
113
PKRPASAFFIFMEDFRVQYKQKHPNNKSVAAVGKAGGDKWKSMSEAEKAPFAAKAEKRKDEYNKKMNAYN
Eucgr.J02535.5
Sox
44
113
PKRPASAFFIFMEDFRVQYKQKHPNNKSVAAVGKAGGDKWKSMSEAEKAPFAAKAEKRKDEYNKKMNAYN
Links
Other
Sox
family TFs
Other
Eucalyptus grandis
TFs
307 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy