evm.TU.supercontig_365.4 (Carica papaya)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 evm.TU.supercontig_365.4 T334499_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.612 0.754
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_365.4 Sox 38 107

Links

Other Sox family TFs
Other Carica papaya TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.698
TCM_000068 Theobroma cacao TCM_000068 I 0.689
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.683
Cla009093 Citrullus lanatus Cla009093 I 0.673
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.673
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.661
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.655
MDP0000275042 Malus domestica MDP0000275042 I 0.650
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.649
Ca_04825 Cicer arietinum Ca_04825 I 0.649
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.648
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.648
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.648
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.645
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.645
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.645
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.644
MDP0000757111 Malus domestica MDP0000757111 I 0.643
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.643
MDP0000362980 Malus domestica MDP0000362980 I 0.643
Pm018913 Prunus mume Pm018913 I 0.643
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.641
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.641
mgf009330m Mimulus guttatus mgf009330m I 0.641
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.640
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.639
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.639
Si031512m.g Setaria italica Si031512m.g I 0.639
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.639
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.639
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.639
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.639
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.639
TCM_034406 Theobroma cacao TCM_034406 I 0.639
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.639
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.638
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.638
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.636
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.636
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.635
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.635
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.635
mgf016363m Mimulus guttatus mgf016363m I 0.634
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.633
30170.m014386 Ricinus communis 30170.m014386 I 0.632
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.632
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.632
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.632
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.632
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.630
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.630
Pm026798 Prunus mume Pm026798 I 0.629
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.629
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.629
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.628
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.628
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.628
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.628
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.628
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.627
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.627
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.627
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.624
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.624
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.624
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.624
Ca_19340 Cicer arietinum Ca_19340 I 0.624
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.623
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.621
Bo7g014280 Brassica oleracea Bo7g014280 I 0.621
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.621
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.621
MDP0000607529 Malus domestica MDP0000607529 I 0.621
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.621
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.621
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.620
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.620
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.620
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.620
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.619
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.619
Pm002934 Prunus mume Pm002934 I 0.617
29701.m000600 Ricinus communis 29701.m000600 I 0.617
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.617
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.617
PK29786.1 Cannabis sativa PK29786.1 I 0.615
Bra002073 Brassica rapa Bra002073 I 0.613
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.613
HMG-1 Pisum sativum Q41026_PEA D 0.612
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.611
Ca_09896 Cicer arietinum Ca_09896 I 0.609
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.609
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.608
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.608
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.608
Bo1g006360 Brassica oleracea Bo1g006360 I 0.608
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.608
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.608
Bra011624 Brassica rapa Bra011624 I 0.608
Si007288m.g Setaria italica Si007288m.g I 0.608
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.608
Bo7g117500 Brassica oleracea Bo7g117500 I 0.608
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.608
Bra017723 Brassica rapa Bra017723 I 0.608
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.608
OBART06G28090 Oryza barthii OBART06G28090 I 0.608
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.608
OS06G0728000 Oryza sativa OS06G0728000 I 0.608
TCM_042534 Theobroma cacao TCM_042534 I 0.608
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.608
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.608
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.608
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.608
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.608
OS09G0551600 Oryza sativa OS09G0551600 I 0.607
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.607
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.607
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.607
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.607
PK11149.1 Cannabis sativa PK11149.1 I 0.606
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.606
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.606
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.605
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.605
HMGB3 Arabidopsis thaliana AT1G20696 I 0.604
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.604
Bra025838 Brassica rapa Bra025838 I 0.604
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.604
Bo8g070350 Brassica oleracea Bo8g070350 I 0.604
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.604
Bo7g061420 Brassica oleracea Bo7g061420 I 0.604
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.604
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.604
Cla023817 Citrullus lanatus Cla023817 I 0.601
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.601
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.601
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.601
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.601
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.601
OB09G25530 Oryza brachyantha OB09G25530 I 0.601
OB06G35870 Oryza brachyantha OB06G35870 I 0.601
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.601
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.601
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.601
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.599
HMGB4 Arabidopsis thaliana AT2G17560 I 0.599
mgf014518m Mimulus guttatus mgf014518m I 0.598
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.596
Bra037266 Brassica rapa Bra037266 I 0.596
F775_27510 Aegilops tauschii F775_27510 I 0.595
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.595
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.595
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.595
TCM_021706 Theobroma cacao TCM_021706 I 0.594
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.594
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.593
mgf008076m Mimulus guttatus mgf008076m I 0.592
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.592
mgf016608m Mimulus guttatus mgf016608m I 0.592
29669.m000844 Ricinus communis 29669.m000844 I 0.592
mgf006113m Mimulus guttatus mgf006113m I 0.592
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.590
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.589
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.589
Ca_10725 Cicer arietinum Ca_10725 I 0.589
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.589
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.586
HMGB1 Arabidopsis thaliana AT3G51880 I 0.586
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.586
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.586
Bo7g101270 Brassica oleracea Bo7g101270 I 0.586
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.586
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.585
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.584
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.584
Cla018386 Citrullus lanatus Cla018386 I 0.584
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.584
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.583
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.583
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.583
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.582
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.580
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.580
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.580
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.580
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.580
HMGB2 Arabidopsis thaliana AT1G20693 I 0.580
Bo5g030580 Brassica oleracea Bo5g030580 I 0.577
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.576
Bo8g081200 Brassica oleracea Bo8g081200 I 0.573
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.573
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.572
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.567
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.556
29600.m000548 Ricinus communis 29600.m000548 I 0.554
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.552
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.551
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.549
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.545
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.545
Ca_05351 Cicer arietinum Ca_05351 I 0.544
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.544
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.544
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.535
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.531
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.531
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.531
PK14705.1 Cannabis sativa PK14705.1 I 0.524
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.523
mgf000913m Mimulus guttatus mgf000913m I 0.523
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.521
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.519
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.519
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.513
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.508
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.507
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.493
HMGB5 Arabidopsis thaliana AT4G35570 I 0.487
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.486
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.486
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.480
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.476
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.455
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.453
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.448
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.448
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.445
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.445
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.444
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.443
TA04735 Theileria annulata TA04735 I 0.443
TP03_0469 Theileria parva TP03_0469 I 0.443
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.440
PK27241.1 Cannabis sativa PK27241.1 I 0.439
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.437
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.437
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.433
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.433
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.432
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.432
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.432
OB02G34710 Oryza brachyantha OB02G34710 N 0.432
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.432
OBART02G27340 Oryza barthii OBART02G27340 N 0.432
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.432
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.432
OS02G0670400 Oryza sativa OS02G0670400 N 0.432
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.429
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.429
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.429
SSRP1 Arabidopsis thaliana AT3G28730 I 0.429
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.429
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.429
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.428
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.428
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.427
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.425
SNAPOd2T00016002001 Oikopleura dioica SNAPOd2T00016002001 N 0.424
PY05184 Plasmodium yoelii PY05184 I 0.421
PBANKA_060190 Plasmodium berghei PBANKA_060190 I 0.421
PCHAS_060370 Plasmodium chabaudi PCHAS_060370 I 0.421
PFL0145c Plasmodium falciparum PFL0145c I 0.421
EuGene.0200010054 Micromonas sp RCC299 EuGene.0200010054 N 0.420
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.420
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.420
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.419
GB47837 Apis mellifera GB47837 N 0.417
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.417
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.417
SINV22588 Solenopsis invicta SINV22588 N 0.417
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.416
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.415
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.415
Si018635m.g Setaria italica Si018635m.g N 0.415
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.415
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.415
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.415