CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.C_Chr_03000283
(
Micromonas sp RCC299
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh2_pg.C_Chr_03000283
T334507_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
99502
Sox
1055
1098
EEKPPTAFSLFVKEHFAATKERMPAGTPHKNIMKELSGLWKSGG
Links
Other
Sox
family TFs
Other
Micromonas sp RCC299
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30149.m000231
Ricinus communis
30149.m000231
I
0.000
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.000
Ca_26916
Cicer arietinum
Ca_26916
I
0.000
Cla015469
Citrullus lanatus
Cla015469
I
0.000
Cucsa.050160
Cucumis sativus
Cucsa.050160
I
0.000
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.000
GLYMA08G16190
Glycine max
GLYMA08G16190
I
0.000
GLYMA12G36750
Glycine max
GLYMA12G36750
I
0.000
GLYMA13G27455
Glycine max
GLYMA13G27455
I
0.000
GLYMA15G42680
Glycine max
GLYMA15G42680
I
0.000
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.000
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.000
POPTR_0001s27680
Populus trichocarpa
POPTR_0001s27680
I
0.000
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.000
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.000