gene00778-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene00778-v1.0-hybrid T334508_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna00778.1-v1.0-hybrid Sox 15 71

Links

Other Sox family TFs
Other Fragaria vesca TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene24465-v1.0-hybrid Fragaria vesca gene24465-v1.0-hybrid N 0.565
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.452
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.452
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.451
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.451
PLEOSDRAFT_1105084 Pleurotus ostreatus PLEOSDRAFT_1105084 N 0.451
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.451
MDP0000242568 Malus domestica MDP0000242568 I 0.450
MDP0000205665 Malus domestica MDP0000205665 I 0.450
Pm006054 Prunus mume Pm006054 I 0.448
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.448
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.444
Ca_14341 Cicer arietinum Ca_14341 N 0.437
ANCCAN_05715 Ancylostoma caninum ANCCAN_05715 N 0.433
Traes_5DL_BCFE39D13 Triticum aestivum Traes_5DL_BCFE39D13 N 0.429
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.429
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.429
TELCIR_05563 Teladorsagia circumcincta TELCIR_05563 N 0.425
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.425
YQE_03562 Dendroctonus ponderosae YQE_03562 N 0.420
TRIUR3_17303 Triticum urartu TRIUR3_17303 N 0.420
GF20527 Drosophila ananassae FBgn0097533 N 0.417
PPAI008151 Phlebotomus papatasi PPAI008151 N 0.417
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.416
ANCDUO_24624 Ancylostoma duodenale ANCDUO_24624 N 0.416