gene20961-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene20961-v1.0-hybrid T334517_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.554 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20961.1-v1.0-hybrid Sox 86 155

Links

Other Sox family TFs
Other Fragaria vesca TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29600.m000548 Ricinus communis 29600.m000548 I 0.516
29669.m000844 Ricinus communis 29669.m000844 I 0.590
29701.m000600 Ricinus communis 29701.m000600 I 0.586
30170.m014386 Ricinus communis 30170.m014386 I 0.617
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.566
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.619
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.602
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.420
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.592
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.608
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.594
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.644
HMGB2 Arabidopsis thaliana AT1G20693 I 0.545
HMGB3 Arabidopsis thaliana AT1G20696 I 0.598
HMGB4 Arabidopsis thaliana AT2G17560 I 0.509
HMGB1 Arabidopsis thaliana AT3G51880 I 0.566
HMGB5 Arabidopsis thaliana AT4G35570 I 0.528
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.418
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.484
Bo1g006360 Brassica oleracea Bo1g006360 I 0.518
Bo5g030580 Brassica oleracea Bo5g030580 I 0.566
Bo7g014280 Brassica oleracea Bo7g014280 I 0.550
Bo7g061420 Brassica oleracea Bo7g061420 I 0.598
Bo7g101270 Brassica oleracea Bo7g101270 I 0.563
Bo7g117500 Brassica oleracea Bo7g117500 I 0.518
Bo8g070350 Brassica oleracea Bo8g070350 I 0.598
Bo8g081200 Brassica oleracea Bo8g081200 I 0.553
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.518
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.566
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.598
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.545
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.566
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.424
Bra002073 Brassica rapa Bra002073 I 0.542
Bra011624 Brassica rapa Bra011624 I 0.518
Bra017723 Brassica rapa Bra017723 I 0.518
Bra025838 Brassica rapa Bra025838 I 0.593
Bra037266 Brassica rapa Bra037266 I 0.525
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.563
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.422
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.603
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.566
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.518
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.591
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.598
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.545
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.591
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.545
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.598
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.518
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.553
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.471
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.617
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.617
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.617
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.570
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.632
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.617
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.572
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.572
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.572
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.572
Ca_04825 Cicer arietinum Ca_04825 I 0.527
Ca_05351 Cicer arietinum Ca_05351 I 0.488
Ca_09896 Cicer arietinum Ca_09896 I 0.571
Ca_10725 Cicer arietinum Ca_10725 I 0.562
Ca_19340 Cicer arietinum Ca_19340 I 0.614
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.512
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.508
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.622
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.587
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.584
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.612
Cla009093 Citrullus lanatus Cla009093 I 0.627
Cla018386 Citrullus lanatus Cla018386 I 0.560
Cla023817 Citrullus lanatus Cla023817 I 0.568
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.580
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.568
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.627
ECPE_0000536801 Echinostoma caproni ECPE_0000536801 N 0.415
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.504
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.630
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.622
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.591
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.624
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.556
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.587
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.580
F775_27510 Aegilops tauschii F775_27510 I 0.563
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.566
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.545
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.598
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.518
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.627
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.593
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.570
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.560
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.560
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.600
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.600
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.594
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.445
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.594
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.474
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.559
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.622
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.594
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.627
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.585
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.593
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.547
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.422
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.604
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.573
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.563
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.559
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.587
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.587
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.518
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.553
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.424
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.587
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.587
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.504
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.504
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.585
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.556
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.575
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.580
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.580
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.592
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.538
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.583
MDP0000242568 Malus domestica MDP0000242568 I 0.436
MDP0000275042 Malus domestica MDP0000275042 I 0.613
MDP0000362980 Malus domestica MDP0000362980 I 0.646
MDP0000607529 Malus domestica MDP0000607529 I 0.610
MDP0000757111 Malus domestica MDP0000757111 I 0.646
mgf000913m Mimulus guttatus mgf000913m I 0.490
mgf006113m Mimulus guttatus mgf006113m I 0.573
mgf008076m Mimulus guttatus mgf008076m I 0.573
mgf009330m Mimulus guttatus mgf009330m I 0.577
mgf014518m Mimulus guttatus mgf014518m I 0.572
mgf016363m Mimulus guttatus mgf016363m I 0.596
mgf016608m Mimulus guttatus mgf016608m I 0.573
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.415
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.563
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.530
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.560
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.584
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.595
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.472
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.563
OB01G34910 Oryza brachyantha OB01G34910 I 0.430
OB02G34710 Oryza brachyantha OB02G34710 N 0.418
OB06G35870 Oryza brachyantha OB06G35870 I 0.563
OB09G25530 Oryza brachyantha OB09G25530 I 0.575
OBART02G27340 Oryza barthii OBART02G27340 N 0.418
OBART06G28090 Oryza barthii OBART06G28090 I 0.556
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.418
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.556
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.556
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.418
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.556
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.568
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.418
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.556
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.568
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.418
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.556
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.612
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.587
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.622
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.572
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.556
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.568
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.418
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.556
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.568
OS02G0670400 Oryza sativa OS02G0670400 N 0.418
OS06G0728000 Oryza sativa OS06G0728000 I 0.556
OS09G0551600 Oryza sativa OS09G0551600 I 0.568
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.613
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.613
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.556
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.428
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.556
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.644
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.477
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.622
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.630
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.589
PK11149.1 Cannabis sativa PK11149.1 I 0.562
PK14705.1 Cannabis sativa PK14705.1 I 0.498
PK27241.1 Cannabis sativa PK27241.1 I 0.423
PK29786.1 Cannabis sativa PK29786.1 I 0.561
Pm002934 Prunus mume Pm002934 I 0.591
Pm018913 Prunus mume Pm018913 I 0.646
Pm026798 Prunus mume Pm026798 I 0.588
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.627
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.593
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.627
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.579
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.619
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.591
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.598
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.646
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.598
HMG-1 Pisum sativum Q41026_PEA D 0.554
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.598
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.586
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.593
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.627
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.613
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.586
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.613
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.422
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.563
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.566
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.501
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.482
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.482
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.501
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.566
Si003021m.g Setaria italica Si003021m.g N 0.422
Si007288m.g Setaria italica Si007288m.g I 0.556
Si031512m.g Setaria italica Si031512m.g I 0.613
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.622
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.436
TCM_000068 Theobroma cacao TCM_000068 I 0.630
TCM_021706 Theobroma cacao TCM_021706 I 0.601
TCM_034406 Theobroma cacao TCM_034406 I 0.622
TCM_042534 Theobroma cacao TCM_042534 I 0.606
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.654
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.560
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.568
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.525
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.512
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.442
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.621
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.594
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.563
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.575
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.632
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.628
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.426
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.619
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.632