gene20961-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene20961-v1.0-hybrid T334517_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.554 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20961.1-v1.0-hybrid Sox 86 155

Links

Other Sox family TFs
Other Fragaria vesca TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.000
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.000
Bra031159 Brassica rapa Bra031159 I 0.000
CSP2 Arabidopsis thaliana AT4G38680 I 0.000
Bo2g119240 Brassica oleracea Bo2g119240 I 0.000
Bo3g141510 Brassica oleracea Bo3g141510 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Bo7g049880 Brassica oleracea Bo7g049880 I 0.000
Bo8g102040 Brassica oleracea Bo8g102040 I 0.000
Bra030325 Brassica rapa Bra030325 I 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000