gene32050-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene32050-v1.0-hybrid T334524_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.513 0.668
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.513 0.668
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna32050.1-v1.0-hybrid Sox 176 244
mrna32050.1-v1.0-hybrid Sox 292 359
mrna32050.1-v1.0-hybrid Sox 420 488

Links

Other Sox family TFs
Other Fragaria vesca TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm024077 Prunus mume Pm024077 I 0.625
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.625
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.609
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.590
TCM_016416 Theobroma cacao TCM_016416 I 0.585
Cla011101 Citrullus lanatus Cla011101 I 0.575
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.571
30190.m010807 Ricinus communis 30190.m010807 I 0.568
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.567
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.566
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.560
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.544
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.544
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.534
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.534
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.533
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.532
HMGB6 Arabidopsis thaliana AT4G23800 I 0.530
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.525
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.524
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.517
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.513
HMGB13 Arabidopsis thaliana AT4G11080 D 0.513
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.512
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.511
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.504
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.503
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.503
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.501
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.500
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.497
PK10992.1 Cannabis sativa PK10992.1 I 0.497
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.493
Bo1g037180 Brassica oleracea Bo1g037180 I 0.490
Bra013731 Brassica rapa Bra013731 I 0.490
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.482
MDP0000268093 Malus domestica MDP0000268093 I 0.481
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.475
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.473
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.467
mgf015439m Mimulus guttatus mgf015439m I 0.465
Bra035256 Brassica rapa Bra035256 I 0.450
Ca_05811 Cicer arietinum Ca_05811 I 0.448
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.443
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.434
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.429
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.429
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.426
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.421