gene32050-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene32050-v1.0-hybrid T334524_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.513 0.668
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.513 0.668
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna32050.1-v1.0-hybrid Sox 176 244
mrna32050.1-v1.0-hybrid Sox 292 359
mrna32050.1-v1.0-hybrid Sox 420 488

Links

Other Sox family TFs
Other Fragaria vesca TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SMAR000031 Strigamia maritima SMAR000031 N 0.000
SMAR001027 Strigamia maritima SMAR001027 N 0.000
SMAR001105 Strigamia maritima SMAR001105 N 0.000
SMAR002508 Strigamia maritima SMAR002508 N 0.000
SMAR006519 Strigamia maritima SMAR006519 N 0.000
SMAR012255 Strigamia maritima SMAR012255 N 0.000
SMAR012725 Strigamia maritima SMAR012725 N 0.000
SMAR014367 Strigamia maritima SMAR014367 N 0.000