CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G024900
(
Gossypium raimondii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Gorai.006G024900
T334539_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.436
0.435
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G024900.1
Sox
578
646
PKRAMSGFMFFSQVERENIKKTNPGASFAEISRILGEKWKKLSEEEKEPYEAKAKVDKRRYDVERNAYK
Gorai.006G024900.2
Sox
555
623
PKRAMSGFMFFSQVERENIKKTNPGASFAEISRILGEKWKKLSEEEKEPYEAKAKVDKRRYDVERNAYK
Gorai.006G024900.4
Sox
438
506
PKRAMSGFMFFSQVERENIKKTNPGASFAEISRILGEKWKKLSEEEKEPYEAKAKVDKRRYDVERNAYK
Links
Other
Sox
family TFs
Other
Gossypium raimondii
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy