CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G018500
(
Gossypium raimondii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Gorai.013G018500
T334555_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.524
0.638
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G018500.1
Sox
58
126
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAVMHKTSNAASPDLAMYRSNVHRL
Gorai.013G018500.2
Sox
58
127
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAEKAPYKVKATERKSEYEKLMAAYN
Gorai.013G018500.3
Sox
58
127
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAEKAPYKVKATERKSEYEKLMAAYN
Gorai.013G018500.4
Sox
58
127
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAEKAPYKVKATERKSEYEKLMAAYN
Gorai.013G018500.5
Sox
58
127
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAEKAPYKVKATERKSEYEKLMAAYN
Gorai.013G018500.6
Sox
58
105
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAVS
Gorai.013G018500.7
Sox
58
105
PKRPATAFFVFMEEFRTSYKQEHPKVKAISAVGKAGGEKWKSMSNAVS
Links
Other
Sox
family TFs
Other
Gossypium raimondii
TFs
296 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy