Lus10003904.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10003904.g T334558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.553 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.553 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003904 Sox 177 245
Lus10003904 Sox 295 361
Lus10003904 Sox 423 491

Links

Other Sox family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.698
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.609
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.589
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.569
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.569
TCM_016416 Theobroma cacao TCM_016416 I 0.568
30190.m010807 Ricinus communis 30190.m010807 I 0.555
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.553
Pm024077 Prunus mume Pm024077 I 0.553
HMGB13 Arabidopsis thaliana AT4G11080 D 0.553
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.550
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.546
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.545
Cla011101 Citrullus lanatus Cla011101 I 0.543
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.541
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.539
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.538
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.533
Bra035256 Brassica rapa Bra035256 I 0.529
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.529
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.526
HMGB6 Arabidopsis thaliana AT4G23800 I 0.515
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.510
mgf015439m Mimulus guttatus mgf015439m I 0.509
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.507
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.505
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.504
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.500
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.492
Bo1g037180 Brassica oleracea Bo1g037180 I 0.489
Bra013731 Brassica rapa Bra013731 I 0.489
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.481
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.479
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.478
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.478
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.462
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.462
MDP0000268093 Malus domestica MDP0000268093 I 0.458
Si017040m.g Setaria italica Si017040m.g I 0.457
PK10992.1 Cannabis sativa PK10992.1 I 0.456
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.453
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.445
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.444
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.439
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.437
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.436
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.432
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.427
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.419