Lus10015268.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10015268.g T334564_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015268 Sox 82 151

Links

Other Sox family TFs
Other Linum usitatissimum TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.729
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.663
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.637
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.636
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.629
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.626
PK22924.1 Cannabis sativa PK22924.1 N 0.622
Bo4g182600 Brassica oleracea Bo4g182600 N 0.620
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.620
Bra021911 Brassica rapa Bra021911 N 0.620
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.619
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.617
29693.m002035 Ricinus communis 29693.m002035 N 0.617
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.617
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.617
TCM_029514 Theobroma cacao TCM_029514 N 0.617
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.614
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.608
F775_05073 Aegilops tauschii F775_05073 I 0.608
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.596
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.595
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.595
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.595
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.588
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.588
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.587
mgf009922m Mimulus guttatus mgf009922m N 0.582
Ca_05164 Cicer arietinum Ca_05164 N 0.579
Ca_05162 Cicer arietinum Ca_05162 N 0.579
MDP0000695104 Malus domestica MDP0000695104 N 0.578
MDP0000143506 Malus domestica MDP0000143506 N 0.575
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.571
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.571
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.569
Si003021m.g Setaria italica Si003021m.g N 0.562
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.561
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.558
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.555
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.547
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.543
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.543
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.530
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.530
OB01G34910 Oryza brachyantha OB01G34910 I 0.507
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.486
OBART01G25720 Oryza barthii OBART01G25720 N 0.465
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.465
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.465
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.465
OS01G0666200 Oryza sativa OS01G0666200 N 0.465
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.465
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.465
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.462
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.462
MDP0000170945 Malus domestica MDP0000170945 N 0.461
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.428
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.426
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.426
MDP0000392251 Malus domestica MDP0000392251 N 0.423
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.416