Lus10035511.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10035511.g T334583_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.579 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10035511 Sox 90 159

Links

Other Sox family TFs
Other Linum usitatissimum TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.649
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.649
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.647
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.647
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.647
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.641
29701.m000600 Ricinus communis 29701.m000600 I 0.639
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.636
Ca_19340 Cicer arietinum Ca_19340 I 0.633
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.632
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.632
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.632
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.632
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.620
TCM_042534 Theobroma cacao TCM_042534 I 0.619
mgf016363m Mimulus guttatus mgf016363m I 0.615
TCM_021706 Theobroma cacao TCM_021706 I 0.613
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.613
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.613
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.612
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.609
Pm002934 Prunus mume Pm002934 I 0.609
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.605
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.605
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.605
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.605
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.605
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.604
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.604
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.604
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.604
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.603
Ca_05351 Cicer arietinum Ca_05351 I 0.600
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.599
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.597
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.596
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.594
Cla023817 Citrullus lanatus Cla023817 I 0.594
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.593
OB06G35870 Oryza brachyantha OB06G35870 I 0.589
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.589
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.589
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.589
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.588
PK29786.1 Cannabis sativa PK29786.1 I 0.587
Ca_04825 Cicer arietinum Ca_04825 I 0.587
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.586
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.584
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.584
F775_27510 Aegilops tauschii F775_27510 I 0.583
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.583
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.583
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.582
OBART06G28090 Oryza barthii OBART06G28090 I 0.582
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.582
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.582
Si007288m.g Setaria italica Si007288m.g I 0.582
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.582
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.582
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.582
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.582
OS06G0728000 Oryza sativa OS06G0728000 I 0.582
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.582
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.582
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.582
Ca_10725 Cicer arietinum Ca_10725 I 0.581
PK11149.1 Cannabis sativa PK11149.1 I 0.581
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.580
Cla018386 Citrullus lanatus Cla018386 I 0.579
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.579
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.579
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.579
HMG-1 Pisum sativum Q41026_PEA D 0.579
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.578
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.578
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.578
HMGB1 Arabidopsis thaliana AT3G51880 I 0.578
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.578
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.577
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.576
Bo7g101270 Brassica oleracea Bo7g101270 I 0.576
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.576
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.576
Pm018913 Prunus mume Pm018913 I 0.573
MDP0000757111 Malus domestica MDP0000757111 I 0.573
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.573
MDP0000362980 Malus domestica MDP0000362980 I 0.573
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.572
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.572
Bo7g014280 Brassica oleracea Bo7g014280 I 0.570
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.570
TCM_000068 Theobroma cacao TCM_000068 I 0.570
Bra002073 Brassica rapa Bra002073 I 0.570
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.569
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.566
Cla009093 Citrullus lanatus Cla009093 I 0.566
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.566
Bo8g081200 Brassica oleracea Bo8g081200 I 0.566
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.566
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.565
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.565
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.565
MDP0000607529 Malus domestica MDP0000607529 I 0.565
HMGB2 Arabidopsis thaliana AT1G20693 I 0.565
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.565
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.562
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.562
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.562
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.562
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.561
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.561
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.561
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.560
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.560
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.560
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.560
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.560
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.556
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.556
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.556
TCM_034406 Theobroma cacao TCM_034406 I 0.556
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.554
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.553
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.553
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.553
Si031512m.g Setaria italica Si031512m.g I 0.553
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.553
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.551
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.551
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.551
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.551
30170.m014386 Ricinus communis 30170.m014386 I 0.551
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.551
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.551
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.551
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.549
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.549
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.549
MDP0000275042 Malus domestica MDP0000275042 I 0.546
Bra037266 Brassica rapa Bra037266 I 0.545
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.545
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.545
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.545
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.545
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.544
Bra011624 Brassica rapa Bra011624 I 0.544
Bo7g117500 Brassica oleracea Bo7g117500 I 0.544
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.544
Bo1g006360 Brassica oleracea Bo1g006360 I 0.544
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.544
Bra017723 Brassica rapa Bra017723 I 0.544
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.544
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.543
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.543
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.539
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.538
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.538
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.536
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.536
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.536
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.536
HMGB4 Arabidopsis thaliana AT2G17560 I 0.534
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.533
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.533
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.533
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.533
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.533
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.532
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.532
HMGB3 Arabidopsis thaliana AT1G20696 I 0.532
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.532
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.532
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.532
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.532
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.532
Bo8g070350 Brassica oleracea Bo8g070350 I 0.532
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.532
Bo7g061420 Brassica oleracea Bo7g061420 I 0.532
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.529
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.528
Bra025838 Brassica rapa Bra025838 I 0.527
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.527
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.525
29669.m000844 Ricinus communis 29669.m000844 I 0.523
Pm026798 Prunus mume Pm026798 I 0.522
mgf014518m Mimulus guttatus mgf014518m I 0.521
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.518
mgf009330m Mimulus guttatus mgf009330m I 0.517
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.515
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.515
OB09G25530 Oryza brachyantha OB09G25530 I 0.515
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.515
mgf008076m Mimulus guttatus mgf008076m I 0.514
mgf016608m Mimulus guttatus mgf016608m I 0.514
mgf006113m Mimulus guttatus mgf006113m I 0.514
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.512
29600.m000548 Ricinus communis 29600.m000548 I 0.510
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.509
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.509
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.508
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.508
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.508
OS09G0551600 Oryza sativa OS09G0551600 I 0.508
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.508
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.507
Ca_09896 Cicer arietinum Ca_09896 I 0.505
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.505
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.503
Bo5g030580 Brassica oleracea Bo5g030580 I 0.500
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.497
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.497
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.495
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.495
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.492
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.487
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.481
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.472
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.470
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.470
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.464
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.464
Bra026498 Brassica rapa Bra026498 I 0.463
Bo9g014140 Brassica oleracea Bo9g014140 I 0.463
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.462
TCM_007659 Theobroma cacao TCM_007659 I 0.460
30131.m007272 Ricinus communis 30131.m007272 I 0.459
Cla009222 Citrullus lanatus Cla009222 I 0.453
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.453
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.452
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.452
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.449
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.449
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.449
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.449
PK14705.1 Cannabis sativa PK14705.1 I 0.440
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.439
HMGB5 Arabidopsis thaliana AT4G35570 I 0.438
mgf000913m Mimulus guttatus mgf000913m I 0.438
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.437
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.437
PK27241.1 Cannabis sativa PK27241.1 I 0.435
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.435
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.433
PK03866.1 Cannabis sativa PK03866.1 I 0.433
Pm006054 Prunus mume Pm006054 I 0.430
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.430
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.430
Bo2g160920 Brassica oleracea Bo2g160920 I 0.429
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.429
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.429
Bra029371 Brassica rapa Bra029371 I 0.429
EuGene.0200010054 Micromonas sp RCC299 EuGene.0200010054 N 0.428
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.425
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.425
TP03_0469 Theileria parva TP03_0469 I 0.424
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.420
MDP0000205665 Malus domestica MDP0000205665 I 0.420
TA04735 Theileria annulata TA04735 I 0.419
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.418
HMEL015307 Heliconius melpomene HMEL015307 N 0.418
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.417
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.417