Lus10041009.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10041009.g T334588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041009 Sox 115 181

Links

Other Sox family TFs
Other Linum usitatissimum TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.566
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.548
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.547
MDP0000205665 Malus domestica MDP0000205665 I 0.546
Pm006054 Prunus mume Pm006054 I 0.543
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.543
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.538
Bra029371 Brassica rapa Bra029371 I 0.521
Bo2g160920 Brassica oleracea Bo2g160920 I 0.521
Si014434m.g Setaria italica Si014434m.g N 0.520
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.519
Cla009222 Citrullus lanatus Cla009222 I 0.519
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.513
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.508
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.508
30131.m007272 Ricinus communis 30131.m007272 I 0.506
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.502
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.502
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.496
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.494
OS08G0101100 Oryza sativa OS08G0101100 I 0.494
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.494
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.494
OBART08G00070 Oryza barthii OBART08G00070 I 0.494
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.494
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.494
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.494
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.494
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.488
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.488
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.484
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.475
OB08G10120 Oryza brachyantha OB08G10120 N 0.475
mgf009124m Mimulus guttatus mgf009124m N 0.475
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.474
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.474
TCM_007659 Theobroma cacao TCM_007659 I 0.473
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.471
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.467
Bra026498 Brassica rapa Bra026498 I 0.464
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.464
HMGB7 Arabidopsis thaliana AT5G23420 N 0.464
Bo9g014140 Brassica oleracea Bo9g014140 I 0.463
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.456
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.456
PK03866.1 Cannabis sativa PK03866.1 I 0.454
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.445
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.445
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.435
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.432
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.426
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.426
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.426
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.426
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.418