Lus10042065.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10042065.g T334589_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042065 Sox 565 633

Links

Other Sox family TFs
Other Linum usitatissimum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.422
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.422
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.457
Bo7g091510 Brassica oleracea Bo7g091510 N 0.494
Bra025350 Brassica rapa Bra025350 N 0.494
Bra033055 Brassica rapa Bra033055 N 0.435
A1O1_01197 Capronia coronata A1O1_01197 I 0.429
A1O3_08778 Capronia epimyces A1O3_08778 I 0.429
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.445
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.452
G647_10093 Cladophialophora carrionii G647_10093 I 0.429
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.429
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.452
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.421
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.429
PV06_04154 Exophiala oligosperma PV06_04154 I 0.429
PV11_09703 Exophiala sideris PV11_09703 I 0.429
PV08_04655 Exophiala spinifera PV08_04655 I 0.423
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.429
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.741
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.451
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.442
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.495
mgf024995m Mimulus guttatus mgf024995m I 0.455
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.433
JL09_g4543 Pichia kudriavzevii JL09_g4543 N 0.446
PIIN_05794 Piriformospora indica PIIN_05794 I 0.416
RSKR_0000472700 Rhabditophanes kr3021 RSKR_0000472700 N 0.441
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.429
29822.m003476 Ricinus communis 29822.m003476 I 0.443
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.456
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.456
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.432
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.467