MDP0000165147 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000165147 T334593_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000165147 Sox 17 82

Links

Other Sox family TFs
Other Malus domestica TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000828844 Malus domestica MDP0000828844 I 0.524
MDP0000310093 Malus domestica MDP0000310093 I 0.522
TCM_018380 Theobroma cacao TCM_018380 I 0.515
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.514
Pm015842 Prunus mume Pm015842 I 0.514
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.514
GLYMA13G05140 Glycine max GLYMA13G05140 I 0.486
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.480
PK18077.1 Cannabis sativa PK18077.1 I 0.477
Ca_10804 Cicer arietinum Ca_10804 I 0.472
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.469
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.469
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.465
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.465
MDP0000301546 Malus domestica MDP0000301546 I 0.464
SSRP1 Arabidopsis thaliana AT3G28730 I 0.462
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.462
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.462
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.462
Ca_12487 Cicer arietinum Ca_12487 I 0.462
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.461
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.457
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.452
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.448
Cla017295 Citrullus lanatus Cla017295 I 0.448
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.448
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.443
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.442
29822.m003476 Ricinus communis 29822.m003476 I 0.442
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.432
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.428
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.427
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.427
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.427
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.426
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.421
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.421
mgf012563m Mimulus guttatus mgf012563m I 0.418
mgf001267m Mimulus guttatus mgf001267m I 0.417
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.415