MDP0000242568 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000242568 T334603_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.416 0.719
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000242568 Sox 1 58

Links

Other Sox family TFs
Other Malus domestica TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.666
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.666
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.624
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.624
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.624
HMGB3 Arabidopsis thaliana AT1G20696 I 0.614
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.601
Solyc03g032130.2 Solanum lycopersicum Solyc03g032130.2 N 0.581
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.574
F775_32121 Aegilops tauschii F775_32121 N 0.514
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.510
MDP0000607529 Malus domestica MDP0000607529 I 0.505
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.496
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.489
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.488
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.485
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.471
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.468
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.466
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.464
D917_01243 Trichinella nativa D917_01243 N 0.463
D917_08464 Trichinella nativa D917_08464 N 0.463
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.459
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.459
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.457
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.457
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.457
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.455
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.452
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.452
Bra025838 Brassica rapa Bra025838 I 0.452
Bo8g070350 Brassica oleracea Bo8g070350 I 0.450
Bo7g061420 Brassica oleracea Bo7g061420 I 0.450
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.450
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.450
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.448
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.448
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.448
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.448
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.448
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.448
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.446
ANCCAN_05715 Ancylostoma caninum ANCCAN_05715 N 0.446
Pm026798 Prunus mume Pm026798 I 0.445
gw1.88.46.1 Fragilariopsis cylindrus gw1.88.46.1 N 0.444
LCUP018488 Lucilia cuprina LCUP018488 N 0.444
MCINX003696 Melitaea cinxia MCINX003696 N 0.443
mgf009330m Mimulus guttatus mgf009330m I 0.441
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.440
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.440
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.438
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.437
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.436
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.436
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.435
mgf006113m Mimulus guttatus mgf006113m I 0.434
mgf008076m Mimulus guttatus mgf008076m I 0.434
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.434
HelroG167700 Helobdella robusta HelroG167700 N 0.434
mgf016608m Mimulus guttatus mgf016608m I 0.434
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.434
mgf014518m Mimulus guttatus mgf014518m I 0.433
TCM_034406 Theobroma cacao TCM_034406 I 0.430
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.430
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.430
Traes_5DL_BCFE39D13 Triticum aestivum Traes_5DL_BCFE39D13 N 0.430
Ca_09896 Cicer arietinum Ca_09896 I 0.430
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.428
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.427
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.426
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.426
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.426
Cla009093 Citrullus lanatus Cla009093 I 0.426
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.426
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.426
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.426
Bo5g030580 Brassica oleracea Bo5g030580 I 0.425
Bra002073 Brassica rapa Bra002073 I 0.425
HMGB2 Arabidopsis thaliana AT1G20693 I 0.424
DICVIV_04699 Dictyocaulus viviparus DICVIV_04699 N 0.424
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.424
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.424
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.424
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.424
F775_24487 Aegilops tauschii F775_24487 N 0.423
HMGB1 Arabidopsis thaliana AT3G51880 I 0.422
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.422
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.422
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.422
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.422
Bo7g101270 Brassica oleracea Bo7g101270 I 0.421
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.420
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.419
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.419
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.419
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.417
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.417
30170.m014386 Ricinus communis 30170.m014386 I 0.416
HMG-1 Pisum sativum Q41026_PEA D 0.416
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.416
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.416
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.416
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.416
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.416
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.416
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.416
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.416
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.416
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.415
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.415
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.415