MDP0000268093 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000268093 T334607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.460 0.614
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.460 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000268093 Sox 177 243
MDP0000268093 Sox 293 359
MDP0000268093 Sox 421 501

Links

Other Sox family TFs
Other Malus domestica TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.546
Pm024077 Prunus mume Pm024077 I 0.546
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.527
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.505
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.498
Cla011101 Citrullus lanatus Cla011101 I 0.492
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.489
HMGB6 Arabidopsis thaliana AT4G23800 I 0.482
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.481
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.479
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.476
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.474
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.474
TCM_016416 Theobroma cacao TCM_016416 I 0.471
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.462
HMGB13 Arabidopsis thaliana AT4G11080 D 0.460
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.459
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.459
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.458
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.451
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.450
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.450
30190.m010807 Ricinus communis 30190.m010807 I 0.443
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.443
PK10992.1 Cannabis sativa PK10992.1 I 0.436
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.435
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.433
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.431
Ca_05811 Cicer arietinum Ca_05811 I 0.426
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.424
mgf015439m Mimulus guttatus mgf015439m I 0.422
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.419
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.418
Bo1g037180 Brassica oleracea Bo1g037180 I 0.417
Bra013731 Brassica rapa Bra013731 I 0.417