MDP0000320994 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000320994 T334615_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000320994 Sox 677 745

Links

Other Sox family TFs
Other Malus domestica TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29827.m002555 Ricinus communis 29827.m002555 I 0.000
anac071 Arabidopsis lyrata Al_scaffold_0007_2395 I 0.000
anac071 Arabidopsis thaliana AT4G17980 D 0.000
anac096 Arabidopsis thaliana AT5G46590 D 0.000
BGIOSGA033482 Oryza indica BGIOSGA033482 I 0.000
Bo1g019130 Brassica oleracea Bo1g019130 I 0.000
Bo2g130240 Brassica oleracea Bo2g130240 I 0.000
Bo7g075540 Brassica oleracea Bo7g075540 I 0.000
Bo7g105630 Brassica oleracea Bo7g105630 I 0.000
Bostr.30275s0267 Boechera stricta Bostr.30275s0267 I 0.000
Bra012626 Brassica rapa Bra012626 I 0.000
Bra013272 Brassica rapa Bra013272 I 0.000
Bra022046 Brassica rapa Bra022046 I 0.000
Bra025012 Brassica rapa Bra025012 I 0.000
BRADI3G33957 Brachypodium distachyon BRADI3G33957 I 0.000
Cagra.0569s0030 Capsella grandiflora Cagra.0569s0030 I 0.000
Cagra.3356s0092 Capsella grandiflora Cagra.3356s0092 I 0.000
Carubv10007390m.g Capsella rubella Carubv10007390m.g I 0.000
Carubv10028284m.g Capsella rubella Carubv10028284m.g I 0.000
cassava22941.valid.m1 Manihot esculenta cassava22941.valid.m1 I 0.000
Ca_02274 Cicer arietinum Ca_02274 I 0.000
Ca_12837 Cicer arietinum Ca_12837 I 0.000
Ciclev10031966m.g Citrus clementina Ciclev10031966m.g I 0.000
Cla016424 Citrullus lanatus Cla016424 I 0.000
Cucsa.313350 Cucumis sativus Cucsa.313350 I 0.000
Eucgr.D02182 Eucalyptus grandis Eucgr.D02182 I 0.000
Eucgr.E00298 Eucalyptus grandis Eucgr.E00298 I 0.000
evm.TU.supercontig_90.52 Carica papaya evm.TU.supercontig_90.52 I 0.000
anac096 Arabidopsis lyrata fgenesh2_kg.8__135__AT5G46590.1 I 0.000
gene10722-v1.0-hybrid Fragaria vesca gene10722-v1.0-hybrid I 0.000
GLYMA05G23840 Glycine max GLYMA05G23840 I 0.000
GLYMA17G16500 Glycine max GLYMA17G16500 I 0.000
Gorai.003G180600 Gossypium raimondii Gorai.003G180600 I 0.000
Gorai.004G186700 Gossypium raimondii Gorai.004G186700 I 0.000
Gorai.007G031300 Gossypium raimondii Gorai.007G031300 I 0.000
Gorai.008G227800 Gossypium raimondii Gorai.008G227800 I 0.000
GRMZM2G082709 Zea mays GRMZM2G082709 I 0.000
LPERR10G15090 Leersia perrieri LPERR10G15090 I 0.000
Lus10030978.g Linum usitatissimum Lus10030978.g I 0.000
Lus10035373.g Linum usitatissimum Lus10035373.g I 0.000
MDP0000936269 Malus domestica MDP0000936269 I 0.000
MTR_5g014300 Medicago truncatula MTR_5g014300 I 0.000
OB10G26350 Oryza brachyantha OB10G26350 I 0.000
OBART10G19230 Oryza barthii OBART10G19230 I 0.000
OGLUM10G19330 Oryza glumaepatula OGLUM10G19330 I 0.000
OLONG_018722 Oryza longistaminata OLONG_018722 I 0.000
OMERI07G08100 Oryza meridionalis OMERI07G08100 I 0.000
ONIVA10G21790 Oryza nivara ONIVA10G21790 I 0.000
OPUNC10G17630 Oryza punctata OPUNC10G17630 I 0.000
orange1.1g018835m.g Citrus sinensis orange1.1g018835m.g I 0.000
ORGLA10G0144100 Oryza glaberrima ORGLA10G0144100 I 0.000
ORUFI10G20470 Oryza rufipogon ORUFI10G20470 I 0.000
Pavir.Ia03491 Panicum virgatum Pavir.Ia03491 I 0.000
PGSC0003DMG400017505 Solanum tuberosum PGSC0003DMG400017505 I 0.000
PK00339.1 Cannabis sativa PK00339.1 I 0.000
Pm023277 Prunus mume Pm023277 I 0.000
POPTR_0001s02710 Populus trichocarpa POPTR_0001s02710 I 0.000
POPTR_0003s08830 Populus trichocarpa POPTR_0003s08830 I 0.000
PRUPE_ppa007828mg Prunus persica PRUPE_ppa007828mg I 0.000
SapurV1A.0846s0080 Salix purpurea SapurV1A.0846s0080 I 0.000
SapurV1A.0900s0060 Salix purpurea SapurV1A.0900s0060 I 0.000
Sb01g028450 Sorghum bicolor Sb01g028450 I 0.000
Si036301m.g Setaria italica Si036301m.g I 0.000
Solyc08g077110.2 Solanum lycopersicum Solyc08g077110.2 I 0.000
TCM_015749 Theobroma cacao TCM_015749 I 0.000
Thhalv10001200m.g Eutrema salsugineum Thhalv10001200m.g I 0.000
Traes_1DL_A556D8590 Triticum aestivum Traes_1DL_A556D8590 N 0.000
VIT_02s0012g01040 Vitis vinifera VIT_02s0012g01040 I 0.000