orange1.1g029982m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g029982m.g T334641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.425 0.633
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g029982m Sox 75 144
orange1.1g031104m Sox 56 125
orange1.1g032935m Sox 56 125
orange1.1g033035m Sox 56 125
orange1.1g033449m Sox 56 105
orange1.1g033450m Sox 56 105
orange1.1g033573m Sox 56 110
orange1.1g034563m Sox 56 89

Links

Other Sox family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

447 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action