orange1.1g030283m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g030283m.g T334642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.427 0.723
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN

NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.469 0.449
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN

NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.469 0.449
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN

NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.469 0.435
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN

NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.469 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g030283m Sox 55 124
orange1.1g032101m Sox 55 124
orange1.1g034117m Sox 55 102

Links

Other Sox family TFs
Other Citrus sinensis TFs

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TVAG_089030 Trichomonas vaginalis TVAG_089030 N 0.000
TVAG_415210 Trichomonas vaginalis TVAG_415210 N 0.000
TVAG_451680 Trichomonas vaginalis TVAG_451680 N 0.000
TVAG_488290 Trichomonas vaginalis TVAG_488290 N 0.000
TVAG_492630 Trichomonas vaginalis TVAG_492630 N 0.000
TVAG_509260 Trichomonas vaginalis TVAG_509260 N 0.000
TVAG_519610 Trichomonas vaginalis TVAG_519610 N 0.000
TVAG_541710 Trichomonas vaginalis TVAG_541710 N 0.000
TVAG_546520 Trichomonas vaginalis TVAG_546520 N 0.000
TVAG_574420 Trichomonas vaginalis TVAG_574420 N 0.000
TVAG_590230 Trichomonas vaginalis TVAG_590230 N 0.000
TVAG_403490 Trichomonas vaginalis TVAG_403490 N 0.000
TVAG_374420 Trichomonas vaginalis TVAG_374420 N 0.000
TVAG_189350 Trichomonas vaginalis TVAG_189350 N 0.000
TVAG_213050 Trichomonas vaginalis TVAG_213050 N 0.000
TVAG_267240 Trichomonas vaginalis TVAG_267240 N 0.000
TVAG_267720 Trichomonas vaginalis TVAG_267720 N 0.000
TVAG_271450 Trichomonas vaginalis TVAG_271450 N 0.000
TVAG_313450 Trichomonas vaginalis TVAG_313450 N 0.000
TVAG_316440 Trichomonas vaginalis TVAG_316440 N 0.000
TVAG_320900 Trichomonas vaginalis TVAG_320900 N 0.000
TVAG_327420 Trichomonas vaginalis TVAG_327420 N 0.000
TVAG_368380 Trichomonas vaginalis TVAG_368380 N 0.000
TVAG_600430 Trichomonas vaginalis TVAG_600430 N 0.000