orange1.1g031906m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g031906m.g T334644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.640 0.754
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g031906m Sox 38 107
orange1.1g032150m Sox 38 107
orange1.1g032166m Sox 38 107
orange1.1g032178m Sox 38 107
orange1.1g032199m Sox 38 107
orange1.1g032419m Sox 38 107
orange1.1g032803m Sox 38 107
orange1.1g033686m Sox 38 107
orange1.1g033688m Sox 38 107
orange1.1g033714m Sox 38 107
orange1.1g034314m Sox 1 59
orange1.1g034575m Sox 38 84
orange1.1g034585m Sox 38 84
orange1.1g034586m Sox 38 84
orange1.1g034589m Sox 38 84

Links

Other Sox family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action