CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g031906m.g
(
Citrus sinensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
orange1.1g031906m.g
T334644_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.640
0.754
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g031906m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032150m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032166m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032178m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032199m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032419m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g032803m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g033686m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g033688m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g033714m
Sox
38
107
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g034314m
Sox
1
59
MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN
orange1.1g034575m
Sox
38
84
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV
orange1.1g034585m
Sox
38
84
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV
orange1.1g034586m
Sox
38
84
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV
orange1.1g034589m
Sox
38
84
PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV
Links
Other
Sox
family TFs
Other
Citrus sinensis
TFs
389 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy