orange1.1g031973m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g031973m.g T334645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.590 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g031973m Sox 40 109
orange1.1g032085m Sox 40 109
orange1.1g032086m Sox 40 109
orange1.1g032798m Sox 40 109

Links

Other Sox family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

292 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action