Pavir.Ab01026 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ab01026 T334657_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.430 0.614
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.430 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01026.1.p Sox 161 226
Pavir.Ab01026.1.p Sox 284 350
Pavir.Ab01026.1.p Sox 409 477

Links

Other Sox family TFs
Other Panicum virgatum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.718
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.707
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.697
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.671
Si017040m.g Setaria italica Si017040m.g I 0.655
OB02G19930 Oryza brachyantha OB02G19930 N 0.618
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.606
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.602
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.599
OBART02G11160 Oryza barthii OBART02G11160 I 0.581
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.581
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.581
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.581
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.581
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.581
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.580
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.569
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.520
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.515
mgf015439m Mimulus guttatus mgf015439m I 0.508
F775_10696 Aegilops tauschii F775_10696 N 0.507
Cla011101 Citrullus lanatus Cla011101 I 0.488
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.486
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.477
TCM_016416 Theobroma cacao TCM_016416 I 0.471
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.465
30190.m010807 Ricinus communis 30190.m010807 I 0.461
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.459
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.454
Pm024077 Prunus mume Pm024077 I 0.453
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.453
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.451
PK10992.1 Cannabis sativa PK10992.1 I 0.447
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.444
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.438
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.435
HMGB13 Arabidopsis thaliana AT4G11080 D 0.430
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.429
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.429
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.428
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.427
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.427
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.425
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.423
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.418
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.416
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.415