Pavir.Eb02691 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Eb02691 T334669_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.417 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02691.1.p Sox 110 179

Links

Other Sox family TFs
Other Panicum virgatum TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.640
Si003021m.g Setaria italica Si003021m.g N 0.615
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.582
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.582
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.576
Ca_05162 Cicer arietinum Ca_05162 N 0.574
Ca_05164 Cicer arietinum Ca_05164 N 0.574
F775_05073 Aegilops tauschii F775_05073 I 0.571
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.571
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.558
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.549
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.549
MDP0000143506 Malus domestica MDP0000143506 N 0.548
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.547
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.547
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.547
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.547
29693.m002035 Ricinus communis 29693.m002035 N 0.545
MDP0000695104 Malus domestica MDP0000695104 N 0.539
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.538
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.538
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.537
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.537
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.537
TCM_029514 Theobroma cacao TCM_029514 N 0.537
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.533
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.533
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.522
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.522
Bo4g182600 Brassica oleracea Bo4g182600 N 0.522
Bra021911 Brassica rapa Bra021911 N 0.522
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.520
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.518
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.518
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.515
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.511
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.508
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.499
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.497
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.494
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.486
PK22924.1 Cannabis sativa PK22924.1 N 0.473
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.466
mgf009922m Mimulus guttatus mgf009922m N 0.464
OB01G34910 Oryza brachyantha OB01G34910 I 0.463
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.459
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.459
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.449
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.436
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.436
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.435
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.428
HMGB5 Arabidopsis thaliana AT4G35570 I 0.427
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.422
OBART01G25720 Oryza barthii OBART01G25720 N 0.422
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.422
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.422
OS01G0666200 Oryza sativa OS01G0666200 N 0.422
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.422
MDP0000170945 Malus domestica MDP0000170945 N 0.422
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.422
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.422
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.422
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.421
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.421
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.420
HMG-1 Pisum sativum Q41026_PEA D 0.417
HMGB4 Arabidopsis thaliana AT2G17560 I 0.417
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.417
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.417
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.417
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.417
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.417
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.417
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.416
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.416
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.416
HMGB2 Arabidopsis thaliana AT1G20693 I 0.416
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.416