Pavir.J05892 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J05892 T334682_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05892.1.p Sox 45 114

Links

Other Sox family TFs
Other Panicum virgatum TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si003021m.g Setaria italica Si003021m.g N 0.716
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.683
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.683
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.677
F775_05073 Aegilops tauschii F775_05073 I 0.672
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.672
Ca_05162 Cicer arietinum Ca_05162 N 0.666
Ca_05164 Cicer arietinum Ca_05164 N 0.666
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.659
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.650
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.650
MDP0000143506 Malus domestica MDP0000143506 N 0.649
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.648
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.648
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.648
29693.m002035 Ricinus communis 29693.m002035 N 0.646
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.640
MDP0000695104 Malus domestica MDP0000695104 N 0.640
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.639
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.638
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.638
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.638
TCM_029514 Theobroma cacao TCM_029514 N 0.638
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.634
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.634
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.630
Bo4g182600 Brassica oleracea Bo4g182600 N 0.623
Bra021911 Brassica rapa Bra021911 N 0.623
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.623
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.621
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.619
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.612
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.609
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.609
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.607
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.600
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.598
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.597
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.595
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.587
PK22924.1 Cannabis sativa PK22924.1 N 0.574
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.572
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.567
mgf009922m Mimulus guttatus mgf009922m N 0.565
OB01G34910 Oryza brachyantha OB01G34910 I 0.564
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.526
MDP0000170945 Malus domestica MDP0000170945 N 0.514
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.514
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.514
OBART01G25720 Oryza barthii OBART01G25720 N 0.514
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.514
OS01G0666200 Oryza sativa OS01G0666200 N 0.514
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.514
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.514
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.512
MDP0000392251 Malus domestica MDP0000392251 N 0.476
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.436
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.429
Ca_05351 Cicer arietinum Ca_05351 I 0.429
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.428
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.428
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.419