CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J05892
(
Panicum virgatum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Pavir.J05892
T334682_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J05892.1.p
Sox
45
114
PKKPPTAFFYFMEDFRKTYQQENPSVKLMQEIGKACGEKWNTMAFEEKVKYYDIATEKRAEFEKAMIEYN
Links
Other
Sox
family TFs
Other
Panicum virgatum
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si003021m.g
Setaria italica
Si003021m.g
N
0.716
MLOC_7069
Hordeum vulgare
MLOC_7069
N
0.683
Sb03g030540
Sorghum bicolor
Sb03g030540
N
0.683
GRMZM2G024247
Zea mays
GRMZM2G024247
N
0.677
F775_05073
Aegilops tauschii
F775_05073
I
0.672
TRAES3BF031900060CFD_g
Triticum aestivum
TRAES3BF031900060CFD_g
I
0.672
Ca_05162
Cicer arietinum
Ca_05162
N
0.666
Ca_05164
Cicer arietinum
Ca_05164
N
0.666
BRADI2G45927
Brachypodium distachyon
BRADI2G45927
I
0.659
AMTR_s00014p00061870
Amborella trichopoda
AMTR_s00014p00061870
N
0.650
Eucgr.D00306
Eucalyptus grandis
Eucgr.D00306
N
0.650
MDP0000143506
Malus domestica
MDP0000143506
N
0.649
Cagra.7352s0006
Capsella grandiflora
Cagra.7352s0006
N
0.648
Bostr.23794s0665
Boechera stricta
Bostr.23794s0665
N
0.648
Carubv10024236m.g
Capsella rubella
Carubv10024236m.g
N
0.648
29693.m002035
Ricinus communis
29693.m002035
N
0.646
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
0.640
MDP0000695104
Malus domestica
MDP0000695104
N
0.640
PRUPE_ppa013152mg
Prunus persica
PRUPE_ppa013152mg
N
0.639
Gorai.011G042300
Gossypium raimondii
Gorai.011G042300
N
0.638
Ciclev10017037m.g
Citrus clementina
Ciclev10017037m.g
N
0.638
orange1.1g031573m.g
Citrus sinensis
orange1.1g031573m.g
N
0.638
TCM_029514
Theobroma cacao
TCM_029514
N
0.638
GLYMA05G25900
Glycine max
GLYMA05G25900
N
0.634
GLYMA08G08840
Glycine max
GLYMA08G08840
N
0.634
MTR_4g094622
Medicago truncatula
MTR_4g094622
N
0.630
Bo4g182600
Brassica oleracea
Bo4g182600
N
0.623
Bra021911
Brassica rapa
Bra021911
N
0.623
AT2G34450
Arabidopsis thaliana
AT2G34450
N
0.623
Cucsa.047620
Cucumis sativus
Cucsa.047620
N
0.621
SapurV1A.0560s0060
Salix purpurea
SapurV1A.0560s0060
N
0.619
gene30574-v1.0-hybrid
Fragaria vesca
gene30574-v1.0-hybrid
N
0.612
POPTR_0004s13630
Populus trichocarpa
POPTR_0004s13630
N
0.609
GSMUA_Achr4G15000_001
Musa acuminata
GSMUA_Achr4G15000_001
N
0.609
cassava6449.valid.m1
Manihot esculenta
cassava6449.valid.m1
N
0.607
Lus10025391.g
Linum usitatissimum
Lus10025391.g
N
0.600
GSMUA_Achr4G07950_001
Musa acuminata
GSMUA_Achr4G07950_001
N
0.598
Thhalv10017360m.g
Eutrema salsugineum
Thhalv10017360m.g
N
0.597
cassava7606.valid.m1
Manihot esculenta
cassava7606.valid.m1
N
0.595
Lus10015268.g
Linum usitatissimum
Lus10015268.g
N
0.587
PK22924.1
Cannabis sativa
PK22924.1
N
0.574
fgenesh2_kg.4__1466__AT2G34450.2
Arabidopsis lyrata
fgenesh2_kg.4__1466__AT2G34450.2
N
0.572
Aquca_022_00160
Aquilegia coerulea
Aquca_022_00160
N
0.567
mgf009922m
Mimulus guttatus
mgf009922m
N
0.565
OB01G34910
Oryza brachyantha
OB01G34910
I
0.564
LPERR01G21970
Leersia perrieri
LPERR01G21970
N
0.526
MDP0000170945
Malus domestica
MDP0000170945
N
0.514
BGIOSGA004165
Oryza indica
BGIOSGA004165
N
0.514
ORGLA01G0210300
Oryza glaberrima
ORGLA01G0210300
N
0.514
OBART01G25720
Oryza barthii
OBART01G25720
N
0.514
ORUFI01G28620
Oryza rufipogon
ORUFI01G28620
N
0.514
OS01G0666200
Oryza sativa
OS01G0666200
N
0.514
OMERI01G23390
Oryza meridionalis
OMERI01G23390
N
0.514
OGLUM01G29550
Oryza glumaepatula
OGLUM01G29550
N
0.514
BGIOSGA004167
Oryza indica
BGIOSGA004167
N
0.512
MDP0000392251
Malus domestica
MDP0000392251
N
0.476
Traes_3DL_21C50DDF5
Triticum aestivum
Traes_3DL_21C50DDF5
N
0.436
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.429
Ca_05351
Cicer arietinum
Ca_05351
I
0.429
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
0.428
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
0.428
Aquca_007_00897
Aquilegia coerulea
Aquca_007_00897
I
0.419