Pavir.J10680 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J10680 T334685_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J10680.1.p Sox 89 153

Links

Other Sox family TFs
Other Panicum virgatum TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.705
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.701
Si014434m.g Setaria italica Si014434m.g N 0.679
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.615
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.611
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.603
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.598
OBART08G00070 Oryza barthii OBART08G00070 I 0.598
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.598
OS08G0101100 Oryza sativa OS08G0101100 I 0.598
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.598
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.598
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.598
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.598
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.598
OB08G10120 Oryza brachyantha OB08G10120 N 0.580
Pm006054 Prunus mume Pm006054 I 0.577
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.577
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.568
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.568
MDP0000205665 Malus domestica MDP0000205665 I 0.567
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.562
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.562
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.562
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.562
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.562
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.560
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.560
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.542
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.533
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.511
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.510
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.498
Bo2g160920 Brassica oleracea Bo2g160920 I 0.496
Bra029371 Brassica rapa Bra029371 I 0.496
TCM_007659 Theobroma cacao TCM_007659 I 0.496
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.494
PK03866.1 Cannabis sativa PK03866.1 I 0.489
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.488
30131.m007272 Ricinus communis 30131.m007272 I 0.481
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.477
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.477
Cla009222 Citrullus lanatus Cla009222 I 0.473
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.473
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.471
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.466
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.466
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.465
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.459
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.450
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.450
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.450
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.450
OBART04G21800 Oryza barthii OBART04G21800 N 0.450
OB04G28810 Oryza brachyantha OB04G28810 N 0.450
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.450
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.450
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.450
OS04G0564600 Oryza sativa OS04G0564600 N 0.450
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.447
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.444
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.442
Bo9g014140 Brassica oleracea Bo9g014140 I 0.438
Bra026498 Brassica rapa Bra026498 I 0.438
PK14705.1 Cannabis sativa PK14705.1 I 0.432
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.430
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.429
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.428
F775_06533 Aegilops tauschii F775_06533 N 0.428
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.428
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.428
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.428
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.428
TCM_042534 Theobroma cacao TCM_042534 I 0.427
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.426
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.425
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.420
GUITHDRAFT_135067 Guillardia theta GUITHDRAFT_135067 N 0.420
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.420
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.419
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.417
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.417