Pavir.J10741 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J10741 T334686_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J10741.1.p Sox 575 643

Links

Other Sox family TFs
Other Panicum virgatum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si024096m.g Setaria italica Si024096m.g N 0.723
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.651
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.651
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.645
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.645
Si021575m.g Setaria italica Si021575m.g N 0.639
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.603
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.603
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.603
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.603
SSRP1-B Oryza sativa OS05G0182600 N 0.603
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.603
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.603
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.603
OB05G15230 Oryza brachyantha OB05G15230 N 0.603
OBART05G05520 Oryza barthii OBART05G05520 N 0.603
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.603
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.603
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.598
OB01G15440 Oryza brachyantha OB01G15440 N 0.598
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.592
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.592
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.592
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.592
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.592
SSRP1-A Oryza sativa OS01G0184900 N 0.592
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.592
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.592
F775_29723 Aegilops tauschii F775_29723 I 0.592
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.592
OBART01G05540 Oryza barthii OBART01G05540 N 0.592
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.592
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.592
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.590
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.590
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.590
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.590
Si000646m.g Setaria italica Si000646m.g N 0.590
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.587
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.582
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.541
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.541
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.539
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.539
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.539
F775_28104 Aegilops tauschii F775_28104 N 0.539
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.520
mgf024995m Mimulus guttatus mgf024995m I 0.421
TRIATDRAFT_321166 Trichoderma atroviride TRIATDRAFT_321166 I 0.416