Pavir.J38684 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J38684 T334688_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38684.1.p Sox 33 102
Pavir.J38684.2.p Sox 33 102

Links

Other Sox family TFs
Other Panicum virgatum TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.741
Si018635m.g Setaria italica Si018635m.g N 0.713
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.711
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.711
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.699
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.699
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.699
OB02G34710 Oryza brachyantha OB02G34710 N 0.699
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.699
OBART02G27340 Oryza barthii OBART02G27340 N 0.699
OS02G0670400 Oryza sativa OS02G0670400 N 0.699
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.699
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.699
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.699
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.685
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.685
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.685
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.685
F775_30706 Aegilops tauschii F775_30706 I 0.685
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.682
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.651
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.630
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.594
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.559
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.532
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.522
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.501
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.500
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.496
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.494
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.494
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.493
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.493
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.488
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.488
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.487
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.487
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.482
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.482
Bo5g030580 Brassica oleracea Bo5g030580 I 0.481
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.479
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.479
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.478
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.477
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.477
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.477
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.477
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.477
30170.m014386 Ricinus communis 30170.m014386 I 0.477
TCM_034406 Theobroma cacao TCM_034406 I 0.477
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.477
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.477
Cla009093 Citrullus lanatus Cla009093 I 0.477
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.477
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.477
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.477
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.477
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.477
MDP0000275042 Malus domestica MDP0000275042 I 0.477
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.477
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.477
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.477
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.477
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.477
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.476
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.469
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.469
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.468
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.467
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.467
MDP0000757111 Malus domestica MDP0000757111 I 0.467
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.467
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.467
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.467
MDP0000362980 Malus domestica MDP0000362980 I 0.467
Pm018913 Prunus mume Pm018913 I 0.467
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.467
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.465
29669.m000844 Ricinus communis 29669.m000844 I 0.465
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.463
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.462
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.462
TCM_000068 Theobroma cacao TCM_000068 I 0.460
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.457
Cla018386 Citrullus lanatus Cla018386 I 0.457
Bo7g061420 Brassica oleracea Bo7g061420 I 0.456
Bo8g070350 Brassica oleracea Bo8g070350 I 0.456
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.455
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.455
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.455
F775_27510 Aegilops tauschii F775_27510 I 0.455
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.455
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.455
OB06G35870 Oryza brachyantha OB06G35870 I 0.455
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.454
Bra025838 Brassica rapa Bra025838 I 0.454
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.454
TCM_042534 Theobroma cacao TCM_042534 I 0.454
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.451
TCM_021706 Theobroma cacao TCM_021706 I 0.451
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.451
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.451
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.451
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.451
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.451
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.450
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.449
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.449
Cla023817 Citrullus lanatus Cla023817 I 0.449
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.449
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.449
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.448
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.448
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.448
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.448
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.448
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.448
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.448
OBART06G28090 Oryza barthii OBART06G28090 I 0.448
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.448
HMGB3 Arabidopsis thaliana AT1G20696 I 0.448
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.448
OS06G0728000 Oryza sativa OS06G0728000 I 0.448
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.448
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.448
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.448
Ca_09896 Cicer arietinum Ca_09896 I 0.448
Si031512m.g Setaria italica Si031512m.g I 0.448
Si007288m.g Setaria italica Si007288m.g I 0.448
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.448
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.448
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.448
Pm026798 Prunus mume Pm026798 I 0.448
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.448
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.448
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.448
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.448
mgf009330m Mimulus guttatus mgf009330m I 0.444
PK11149.1 Cannabis sativa PK11149.1 I 0.444
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.444
PK29786.1 Cannabis sativa PK29786.1 I 0.443
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.442
mgf016608m Mimulus guttatus mgf016608m I 0.440
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
mgf006113m Mimulus guttatus mgf006113m I 0.440
mgf008076m Mimulus guttatus mgf008076m I 0.440
mgf014518m Mimulus guttatus mgf014518m I 0.440
MDP0000607529 Malus domestica MDP0000607529 I 0.440
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.438
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.438
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.438
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.438
Ca_10725 Cicer arietinum Ca_10725 I 0.436
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.436
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.434
Pm002934 Prunus mume Pm002934 I 0.434
mgf000913m Mimulus guttatus mgf000913m I 0.433
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.431
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.431
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.431
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.431
Bra037266 Brassica rapa Bra037266 I 0.431
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.431
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.426
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.426
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.426
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.426
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.424
HMGB4 Arabidopsis thaliana AT2G17560 I 0.424
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.424
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.424
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.424
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.424
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.423
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.423
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.420
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.420
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.420
OB09G25530 Oryza brachyantha OB09G25530 I 0.420
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.420
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.419
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.419
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.419
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.418
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.418
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.417
Ca_19340 Cicer arietinum Ca_19340 I 0.417
mgf016363m Mimulus guttatus mgf016363m I 0.417
Bra017723 Brassica rapa Bra017723 I 0.416
Bra011624 Brassica rapa Bra011624 I 0.416
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.416
Bo7g117500 Brassica oleracea Bo7g117500 I 0.416
Bo1g006360 Brassica oleracea Bo1g006360 I 0.416
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.415