CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.2780s0020
(
Salix purpurea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
SapurV1A.2780s0020
T334722_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.450
0.633
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.434
0.493
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.434
0.493
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.434
0.478
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.434
0.478
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.2780s0020.1.p
Sox
60
129
PKRPPSAFFVFLEEFRKIYKQENPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYN
SapurV1A.2780s0020.2.p
Sox
55
124
PKRPPSAFFVFLEEFRKIYKQENPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYN
SapurV1A.2780s0020.3.p
Sox
55
104
PKRPPSAFFVFLEEFRKIYKQENPNVKAVSAVGKAGGEKWKSLSAAVLHK
SapurV1A.2780s0020.4.p
Sox
55
103
PKRPPSAFFVFLEEFRKIYKQENPNVKAVSAVGKAGGEKWKSLSAAVSP
Links
Other
Sox
family TFs
Other
Salix purpurea
TFs
406 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy