Thhalv10022905m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10022905m.g T334738_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.661 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10022905m Sox 35 104

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra037266 Brassica rapa Bra037266 I 0.741
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.726
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.726
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.726
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.726
HMGB4 Arabidopsis thaliana AT2G17560 I 0.717
Bra002073 Brassica rapa Bra002073 I 0.707
Bo7g117500 Brassica oleracea Bo7g117500 I 0.688
Bra017723 Brassica rapa Bra017723 I 0.688
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.688
Bo1g006360 Brassica oleracea Bo1g006360 I 0.688
Bra011624 Brassica rapa Bra011624 I 0.688
Bo7g014280 Brassica oleracea Bo7g014280 I 0.687
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.666
HMGB2 Arabidopsis thaliana AT1G20693 I 0.666
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.666
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.666
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.666
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.666
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.664
HMG-1 Pisum sativum Q41026_PEA D 0.661
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.660
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.660
PK29786.1 Cannabis sativa PK29786.1 I 0.656
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.655
Cla023817 Citrullus lanatus Cla023817 I 0.655
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.655
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.652
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.652
Bo7g101270 Brassica oleracea Bo7g101270 I 0.652
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.652
HMGB1 Arabidopsis thaliana AT3G51880 I 0.652
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.652
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.652
Pm026798 Prunus mume Pm026798 I 0.650
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.649
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.649
mgf009330m Mimulus guttatus mgf009330m I 0.644
MDP0000607529 Malus domestica MDP0000607529 I 0.643
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.642
Pm002934 Prunus mume Pm002934 I 0.640
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.640
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.640
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.640
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.640
Bo8g081200 Brassica oleracea Bo8g081200 I 0.640
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.637
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.637
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.637
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.634
Cla009093 Citrullus lanatus Cla009093 I 0.634
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.633
Ca_09896 Cicer arietinum Ca_09896 I 0.631
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.630
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.630
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.630
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.630
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.630
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.630
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.626
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.626
Bo7g061420 Brassica oleracea Bo7g061420 I 0.626
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.626
HMGB3 Arabidopsis thaliana AT1G20696 I 0.626
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.626
Bo8g070350 Brassica oleracea Bo8g070350 I 0.626
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.626
Bra025838 Brassica rapa Bra025838 I 0.626
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.626
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.624
F775_27510 Aegilops tauschii F775_27510 I 0.624
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.624
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.624
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.624
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.624
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.624
OB06G35870 Oryza brachyantha OB06G35870 I 0.624
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.623
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.623
mgf016363m Mimulus guttatus mgf016363m I 0.623
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.622
Ca_04825 Cicer arietinum Ca_04825 I 0.621
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.620
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.620
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.620
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.620
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.619
mgf016608m Mimulus guttatus mgf016608m I 0.618
Ca_10725 Cicer arietinum Ca_10725 I 0.618
mgf008076m Mimulus guttatus mgf008076m I 0.618
mgf006113m Mimulus guttatus mgf006113m I 0.618
TCM_000068 Theobroma cacao TCM_000068 I 0.617
Si007288m.g Setaria italica Si007288m.g I 0.617
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.617
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.617
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.617
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.617
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.617
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.617
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.617
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.617
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.617
OBART06G28090 Oryza barthii OBART06G28090 I 0.617
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.617
OS06G0728000 Oryza sativa OS06G0728000 I 0.617
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.617
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.617
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.617
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.616
MDP0000275042 Malus domestica MDP0000275042 I 0.615
Ca_19340 Cicer arietinum Ca_19340 I 0.614
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.614
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.607
29701.m000600 Ricinus communis 29701.m000600 I 0.606
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.606
mgf014518m Mimulus guttatus mgf014518m I 0.604
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.604
TCM_034406 Theobroma cacao TCM_034406 I 0.604
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.604
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.604
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.604
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.604
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.604
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.604
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.603
TCM_021706 Theobroma cacao TCM_021706 I 0.603
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.603
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.603
Ca_05351 Cicer arietinum Ca_05351 I 0.601
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.599
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.599
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.599
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.599
Bo5g030580 Brassica oleracea Bo5g030580 I 0.598
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.598
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.598
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.597
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.597
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.597
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.597
PK11149.1 Cannabis sativa PK11149.1 I 0.596
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.596
HMGB5 Arabidopsis thaliana AT4G35570 I 0.595
30170.m014386 Ricinus communis 30170.m014386 I 0.594
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.594
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.594
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.594
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.594
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.594
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.594
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.594
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.593
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.593
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.593
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.592
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.592
29669.m000844 Ricinus communis 29669.m000844 I 0.588
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.587
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.587
MDP0000362980 Malus domestica MDP0000362980 I 0.587
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.587
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.587
Cla018386 Citrullus lanatus Cla018386 I 0.587
Pm018913 Prunus mume Pm018913 I 0.587
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.587
MDP0000757111 Malus domestica MDP0000757111 I 0.587
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.586
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.585
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.585
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.584
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.584
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.580
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.575
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.575
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.575
Si031512m.g Setaria italica Si031512m.g I 0.575
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.571
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.568
OB09G25530 Oryza brachyantha OB09G25530 I 0.566
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.566
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.566
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.566
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.560
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.560
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.560
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.560
OS09G0551600 Oryza sativa OS09G0551600 I 0.559
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.559
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.559
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.559
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.559
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.556
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.554
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.553
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.553
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.550
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.550
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.550
TCM_042534 Theobroma cacao TCM_042534 I 0.547
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.545
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.545
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.537
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.535
mgf000913m Mimulus guttatus mgf000913m I 0.530
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.529
29600.m000548 Ricinus communis 29600.m000548 I 0.525
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.525
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.524
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.523
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.520
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.512
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.511
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.506
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.506
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.504
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.497
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.496
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.495
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.492
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.492
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.490
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.490
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.485
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.483
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.483
F775_30706 Aegilops tauschii F775_30706 I 0.483
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.483
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.483
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.482
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.481
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.481
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.479
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.468
TCM_007659 Theobroma cacao TCM_007659 I 0.466
PK03866.1 Cannabis sativa PK03866.1 I 0.462
Cla009222 Citrullus lanatus Cla009222 I 0.460
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.460
TA04735 Theileria annulata TA04735 I 0.456
TP03_0469 Theileria parva TP03_0469 I 0.456
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.456
PK14705.1 Cannabis sativa PK14705.1 I 0.455
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.449
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.446
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.446
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.441
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.440
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.440
PV09_01265 Verruconis gallopava PV09_01265 I 0.437
Pm006054 Prunus mume Pm006054 I 0.437
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.437
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.436
UCRNP2_2405 Neofusicoccum parvum UCRNP2_2405 I 0.433
MPH_02795 Macrophomina phaseolina MPH_02795 I 0.433
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.431
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.431
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.431
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.429
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.429
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.422
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.422
OS02G0670400 Oryza sativa OS02G0670400 N 0.422
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.422
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.422
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.422
OBART02G27340 Oryza barthii OBART02G27340 N 0.422
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.422
OB02G34710 Oryza brachyantha OB02G34710 N 0.422
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.420
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.420
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.420
MDP0000205665 Malus domestica MDP0000205665 I 0.418
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.418
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.418
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.415
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.415
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.415
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.415