CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10028879m.g
(
Eutrema salsugineum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Thhalv10028879m.g
T334742_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10028878m
Sox
136
183
MKDNCSFFGNYRQLRKHVKSVHPRAKPRAIDPVLEEKWKKLEVERERS
Thhalv10028879m
Sox
136
183
MKDNCSFFGNYRQLRKHVKSVHPRAKPRAIDPVLEEKWKKLEVERERS
Thhalv10028880m
Sox
136
183
MKDNCSFFGNYRQLRKHVKSVHPRAKPRAIDPVLEEKWKKLEVERERS
Links
Other
Sox
family TFs
Other
Eutrema salsugineum
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.583
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.578
MDP0000634922
Malus domestica
MDP0000634922
N
0.572
mgf013454m
Mimulus guttatus
mgf013454m
N
0.566
mgf000387m
Mimulus guttatus
mgf000387m
N
0.566
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.559
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.541
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.541
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.541
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.541
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.535
PK04394.1
Cannabis sativa
PK04394.1
N
0.535
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.532
F775_20121
Aegilops tauschii
F775_20121
N
0.532
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.532
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.532
OBART02G34050
Oryza barthii
OBART02G34050
N
0.528
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.528
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.528
OS02G0770600
Oryza sativa
OS02G0770600
N
0.528
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.528
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.528
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.528
OB07G29110
Oryza brachyantha
OB07G29110
N
0.528
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.528
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.528
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.528
Si017699m.g
Setaria italica
Si017699m.g
N
0.528
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.528
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.528
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.528
OB02G40920
Oryza brachyantha
OB02G40920
N
0.522
MDP0000597087
Malus domestica
MDP0000597087
N
0.520
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.520
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.509
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.502
PK16821.1
Cannabis sativa
PK16821.1
N
0.496
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.496
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.494
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.489
Cla002005
Citrullus lanatus
Cla002005
N
0.489
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.487
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.477
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.477
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.477
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.458
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.458
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.455
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.454
30116.m000393
Ricinus communis
30116.m000393
N
0.451
TCM_006422
Theobroma cacao
TCM_006422
N
0.449
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.448