Thhalv10028879m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10028879m.g T334742_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028878m Sox 136 183
Thhalv10028879m Sox 136 183
Thhalv10028880m Sox 136 183

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.583
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.578
MDP0000634922 Malus domestica MDP0000634922 N 0.572
mgf013454m Mimulus guttatus mgf013454m N 0.566
mgf000387m Mimulus guttatus mgf000387m N 0.566
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.559
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.541
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.541
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.541
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.541
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.535
PK04394.1 Cannabis sativa PK04394.1 N 0.535
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.532
F775_20121 Aegilops tauschii F775_20121 N 0.532
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.532
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.532
OBART02G34050 Oryza barthii OBART02G34050 N 0.528
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.528
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.528
OS02G0770600 Oryza sativa OS02G0770600 N 0.528
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.528
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.528
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.528
OB07G29110 Oryza brachyantha OB07G29110 N 0.528
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.528
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.528
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.528
Si017699m.g Setaria italica Si017699m.g N 0.528
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.528
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.528
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.528
OB02G40920 Oryza brachyantha OB02G40920 N 0.522
MDP0000597087 Malus domestica MDP0000597087 N 0.520
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.520
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.509
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.502
PK16821.1 Cannabis sativa PK16821.1 N 0.496
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.496
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.494
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.489
Cla002005 Citrullus lanatus Cla002005 N 0.489
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.487
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.477
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.477
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.477
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.458
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.458
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.455
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.454
30116.m000393 Ricinus communis 30116.m000393 N 0.451
TCM_006422 Theobroma cacao TCM_006422 N 0.449
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.448