CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Contig4075.0.g7
(
Oxytricha trifallax
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Contig4075.0.g7
T334813_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Contig4075.0.g7
Sox
61
129
PKKSASAYIIFGKEKREEIIKKNPGLKVTEVVKQIAATWQSLSKTDRLKYKEASKRDRDRYEKELKTLE
Contig4075.0.g7
Sox
138
203
PKKCLSAYMIFTRPKIVQKNPDMGALQVMQEVGKQWQAMTTDQKKYFKQKADKDKVRYLNEQKAYY
Contig4075.0.g7
Sox
319
387
PIKPQQSVGFFTQALRNALRQKYPFLNDAQICKAVSYRWNQLSDQQKSPFQSLADVDKIRYEKEVTDLK
Links
Other
Sox
family TFs
Other
Oxytricha trifallax
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Contig851.1.g13
Oxytricha trifallax
Contig851.1.g13
N
0.741
Contig502.1.g89
Oxytricha trifallax
Contig502.1.g89
N
0.515