CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Contig502.1.g89
(
Oxytricha trifallax
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Contig502.1.g89
T334815_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Contig502.1.g89
Sox
71
139
PKKSASAYIIFGKEKRAEILSRNPTAKVTEVVKEIAQSWGILSKEDKQKYKDAAKKDKERYDKELRSLE
Contig502.1.g89
Sox
148
216
PKKCLSAYMIFVKETRPLIVDEHPEMGALQVMQEVGKQWQALTEEQKNYFKEKADRDKLRYLNEQRAFY
Contig502.1.g89
Sox
326
394
PKKPLSAYIYFSQEFREIIRARYPTMTVIQVMKAVSYRWGNLSKEQKYPFEQMAVEDKQRYDKEINDCK
Links
Other
Sox
family TFs
Other
Oxytricha trifallax
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Contig851.1.g13
Oxytricha trifallax
Contig851.1.g13
N
0.515
Contig4075.0.g7
Oxytricha trifallax
Contig4075.0.g7
N
0.515
Contig17884.0.g118
Oxytricha trifallax
Contig17884.0.g118
N
0.434