CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP004798
(
Lucilia cuprina
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
LCUP004798
T334863_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TFAM
M11336_2.00
Drosophila melanogaster
KNMTTATCVNH
DNBGATAAKNM
Transfac
Matys et al.(2006)
I$MTTFA_01
0.538
0.635
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP004798-PA
Sox
95
163
PKKPLTPYFRFMKEQRPKIQAANPNLSIVDIVRKVSKEWVTADSSLKQRLQEEYKKEQQKYVEARTKYD
LCUP004798-PA
Sox
200
267
PKKPASAFLRFIAKERMLTPQTTNQTFREWHQKATAKWGTLTDEQKHVYIMESRKELEKYKVEISLWE
Links
Other
Sox
family TFs
Other
Lucilia cuprina
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy