CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fmf-1
(
Neurospora crassa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
NCU09387
T334919_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.497
0.406
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.497
0.406
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.497
0.333
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.497
0.333
For this family, TFs with SR scores >
0.415
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02491_2.00
Sox
52
120
VKRPMNAFMLYRKTYQGVAKGWADEHNHQVVSRVCGMSWPMEPEQVREQFKAWAEKERENHQLAFPDYK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU09387
Sox
170
238
VKRPMNAFMLYRKTYQGVAKGWADEHNHQVVSRVCGMSWPMEPEQVREQFKAWAEKERENHQLAFPDYK
Links
Other
Sox
family TFs
Other
Neurospora crassa
TFs
311 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy