CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK04394.1
(
Cannabis sativa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PK04394.1
T334923_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK04394.1
Sox
209
253
KCPFVGSYKELRKHVKAKHPLARPRAVDPILEEKWKRLECERERS
Links
Other
Sox
family TFs
Other
Cannabis sativa
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.723
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.677
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.677
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.677
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.676
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.670
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.667
mgf000387m
Mimulus guttatus
mgf000387m
N
0.642
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.642
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.642
mgf013454m
Mimulus guttatus
mgf013454m
N
0.642
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.642
F775_20121
Aegilops tauschii
F775_20121
N
0.642
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.627
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.625
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.621
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.621
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.621
MDP0000597087
Malus domestica
MDP0000597087
N
0.611
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.610
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.604
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.604
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.604
Si017699m.g
Setaria italica
Si017699m.g
N
0.604
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.604
OB07G29110
Oryza brachyantha
OB07G29110
N
0.604
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.604
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.604
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.604
OBART02G34050
Oryza barthii
OBART02G34050
N
0.604
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.604
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.604
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.604
OS02G0770600
Oryza sativa
OS02G0770600
N
0.604
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.604
MDP0000634922
Malus domestica
MDP0000634922
N
0.602
TCM_006422
Theobroma cacao
TCM_006422
N
0.599
OB02G40920
Oryza brachyantha
OB02G40920
N
0.598
30116.m000393
Ricinus communis
30116.m000393
N
0.595
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.594
Cla002005
Citrullus lanatus
Cla002005
N
0.593
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.593
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.591
PK16821.1
Cannabis sativa
PK16821.1
N
0.581
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.568
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.568
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.564
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.563
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.538
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.535
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.528
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.503