PK14705.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK14705.1 T334931_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.497 0.717
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK14705.1 Sox 41 101

Links

Other Sox family TFs
Other Cannabis sativa TFs

264 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.682
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.629
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.623
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.615
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.611
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.606
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.605
TCM_042534 Theobroma cacao TCM_042534 I 0.598
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.598
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.595
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.595
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.595
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.594
Si007288m.g Setaria italica Si007288m.g I 0.581
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.574
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.574
TCM_000068 Theobroma cacao TCM_000068 I 0.573
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.563
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.563
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.563
30170.m014386 Ricinus communis 30170.m014386 I 0.563
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.563
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.563
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.563
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.563
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.562
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.562
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.562
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.561
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.560
MDP0000362980 Malus domestica MDP0000362980 I 0.560
MDP0000757111 Malus domestica MDP0000757111 I 0.560
Pm018913 Prunus mume Pm018913 I 0.560
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.560
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.560
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.558
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.558
TCM_034406 Theobroma cacao TCM_034406 I 0.558
Cla009093 Citrullus lanatus Cla009093 I 0.557
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.557
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.556
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.556
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.556
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.556
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.552
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.552
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.552
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.552
MDP0000275042 Malus domestica MDP0000275042 I 0.551
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.546
Si031512m.g Setaria italica Si031512m.g I 0.544
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.544
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.544
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.544
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.539
Ca_09896 Cicer arietinum Ca_09896 I 0.535
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.535
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.534
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.534
Pm026798 Prunus mume Pm026798 I 0.534
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.533
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.533
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.533
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.533
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.533
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.533
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.533
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.531
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.531
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.531
mgf009330m Mimulus guttatus mgf009330m I 0.530
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.530
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.530
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.530
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.527
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.527
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.527
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.527
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.527
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.527
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.527
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.526
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.526
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.526
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.525
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.524
mgf016608m Mimulus guttatus mgf016608m I 0.523
mgf016363m Mimulus guttatus mgf016363m I 0.523
mgf006113m Mimulus guttatus mgf006113m I 0.523
Ca_19340 Cicer arietinum Ca_19340 I 0.523
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.523
mgf008076m Mimulus guttatus mgf008076m I 0.523
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.523
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.523
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.522
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.522
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.522
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.522
OS09G0551600 Oryza sativa OS09G0551600 I 0.522
HMGB3 Arabidopsis thaliana AT1G20696 I 0.521
Bo7g061420 Brassica oleracea Bo7g061420 I 0.521
Bo8g070350 Brassica oleracea Bo8g070350 I 0.521
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.517
mgf014518m Mimulus guttatus mgf014518m I 0.517
Cla018386 Citrullus lanatus Cla018386 I 0.517
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.517
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.517
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.517
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.516
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.516
Bra025838 Brassica rapa Bra025838 I 0.516
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.516
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.516
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.515
OB09G25530 Oryza brachyantha OB09G25530 I 0.515
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.515
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.515
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.515
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.514
Ca_10725 Cicer arietinum Ca_10725 I 0.513
MDP0000607529 Malus domestica MDP0000607529 I 0.513
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.513
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.513
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.513
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.512
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.512
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.512
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.512
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.512
Pm002934 Prunus mume Pm002934 I 0.507
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.507
PK29786.1 Cannabis sativa PK29786.1 I 0.505
29669.m000844 Ricinus communis 29669.m000844 I 0.504
OS06G0728000 Oryza sativa OS06G0728000 I 0.503
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.503
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.503
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.503
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.503
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.503
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.503
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.503
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.503
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N 0.503
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.503
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.503
OBART06G28090 Oryza barthii OBART06G28090 I 0.503
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.503
F775_27510 Aegilops tauschii F775_27510 I 0.502
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.502
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.502
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.500
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.498
HMG-1 Pisum sativum Q41026_PEA D 0.497
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.496
OB06G35870 Oryza brachyantha OB06G35870 I 0.496
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.496
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.495
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.495
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.494
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.494
PK11149.1 Cannabis sativa PK11149.1 I 0.492
HMGB2 Arabidopsis thaliana AT1G20693 I 0.491
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.491
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.491
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.491
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.491
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.491
Cla023817 Citrullus lanatus Cla023817 I 0.491
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.491
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.490
TCM_021706 Theobroma cacao TCM_021706 I 0.490
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.490
Bo5g030580 Brassica oleracea Bo5g030580 I 0.489
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.489
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.485
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.484
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.482
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.482
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.482
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.482
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.482
Bo8g081200 Brassica oleracea Bo8g081200 I 0.482
29600.m000548 Ricinus communis 29600.m000548 I 0.482
HMGB1 Arabidopsis thaliana AT3G51880 I 0.482
Bo7g014280 Brassica oleracea Bo7g014280 I 0.480
Bra002073 Brassica rapa Bra002073 I 0.480
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.479
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.479
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.479
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.479
Bo7g101270 Brassica oleracea Bo7g101270 I 0.477
OS04G0564600 Oryza sativa OS04G0564600 N 0.475
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.475
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.475
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.475
OBART04G21800 Oryza barthii OBART04G21800 N 0.475
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.475
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.475
OB04G28810 Oryza brachyantha OB04G28810 N 0.475
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.475
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.475
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.474
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.474
29701.m000600 Ricinus communis 29701.m000600 I 0.473
Ca_04825 Cicer arietinum Ca_04825 I 0.471
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.469
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.469
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.467
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.466
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.462
Bo7g117500 Brassica oleracea Bo7g117500 I 0.462
Bra011624 Brassica rapa Bra011624 I 0.462
Bo1g006360 Brassica oleracea Bo1g006360 I 0.462
HMGB4 Arabidopsis thaliana AT2G17560 I 0.462
Bra017723 Brassica rapa Bra017723 I 0.462
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.462
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.462
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.462
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.461
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.455
Bra037266 Brassica rapa Bra037266 I 0.455
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.455
Ca_05351 Cicer arietinum Ca_05351 I 0.450
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.449
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.449
OS08G0101100 Oryza sativa OS08G0101100 I 0.449
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.449
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.449
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.449
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.449
OBART08G00070 Oryza barthii OBART08G00070 I 0.449
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.449
mgf000913m Mimulus guttatus mgf000913m I 0.448
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.444
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.444
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.443
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.443
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.443
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.443
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.442
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.440
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.440
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.440
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.439
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.437
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.437
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.437
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.436
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.434
EMIHUDRAFT_252069 Emiliania huxleyi EMIHUDRAFT_252069 N 0.434
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.432
OB08G10120 Oryza brachyantha OB08G10120 N 0.431
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.431
TCM_018380 Theobroma cacao TCM_018380 I 0.430
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.427
mgf012563m Mimulus guttatus mgf012563m I 0.422
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.421
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.421
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.421
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.419
F775_06533 Aegilops tauschii F775_06533 N 0.417
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.417
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.417