PK22924.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK22924.1 T334935_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PK22924.1 Sox 83 152

Links

Other Sox family TFs
Other Cannabis sativa TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.690
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.672
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.670
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.670
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.670
29693.m002035 Ricinus communis 29693.m002035 N 0.670
TCM_029514 Theobroma cacao TCM_029514 N 0.670
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.634
MDP0000143506 Malus domestica MDP0000143506 N 0.633
MDP0000695104 Malus domestica MDP0000695104 N 0.632
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.632
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.629
Bo4g182600 Brassica oleracea Bo4g182600 N 0.624
Bra021911 Brassica rapa Bra021911 N 0.624
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.624
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.624
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.622
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.620
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.619
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.614
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.613
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.612
mgf009922m Mimulus guttatus mgf009922m N 0.610
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.610
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.602
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.597
Ca_05162 Cicer arietinum Ca_05162 N 0.595
Ca_05164 Cicer arietinum Ca_05164 N 0.595
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.592
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.592
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.592
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.589
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.581
F775_05073 Aegilops tauschii F775_05073 I 0.581
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.580
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.574
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.571
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.569
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.562
Si003021m.g Setaria italica Si003021m.g N 0.549
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.537
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.523
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.517
MDP0000170945 Malus domestica MDP0000170945 N 0.506
OB01G34910 Oryza brachyantha OB01G34910 I 0.481
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.473
MDP0000392251 Malus domestica MDP0000392251 N 0.462
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.454
OS01G0666200 Oryza sativa OS01G0666200 N 0.449
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.449
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.449
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.449
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.449
OBART01G25720 Oryza barthii OBART01G25720 N 0.449
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.449
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.446
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.420