Scas_Contig482.3 (Saccharomyces castellii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Scas_Contig482.3 T334959_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NHP10
M00068_2.00
Saccharomyces cerevisiae
TCCCCGGC

GCCGGGGA
PBM
Badis et al.(2008)
NHP10_2069
0.556 0.646
NHP10
M07496_2.00
Saccharomyces cerevisiae
YCCCCGGY

RCCGGGGR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1
0.556 0.646
NHP10
M08604_2.00
Saccharomyces cerevisiae
TCCCCGGY

RCCGGGGA
Misc
DeBoer et al.(2011)
YDL002C_502
0.556 0.646
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig482.3 Sox 102 166

Links

Other Sox family TFs
Other Saccharomyces castellii TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCAS_0A10110 Naumovozyma castellii NCAS_0A10110 I 0.741
NDAI_0A07360 Naumovozyma dairenensis NDAI_0A07360 I 0.660
KAFR_0F02510 Kazachstania africana KAFR_0F02510 I 0.599
TPHA_0P00560 Tetrapisispora phaffii TPHA_0P00560 I 0.590
TBLA_0A00160 Tetrapisispora blattae TBLA_0A00160 I 0.583
CAGL0M10505g Candida glabrata CAGL0M10505g I 0.583
Kpol_1045p57 Vanderwaltozyma polyspora Kpol_1045p57 I 0.568
NHP10 Saccharomyces cerevisiae YDL002C D 0.556
603_YDL002C Saccharomyces bayanus 603_YDL002C I 0.556
3735_YDL002C Saccharomyces paradoxus 3735_YDL002C I 0.556
3225_YDL002C Saccharomyces mikatae 3225_YDL002C I 0.556
SKUD_167206 Saccharomyces kudriavzevii SKUD_167206 I 0.556
KNAG_0K01480 Kazachstania naganishii KNAG_0K01480 I 0.523
ZBAI_07968 Zygosaccharomyces bailii ZBAI_07968 I 0.503
ZYRO0A04378g Zygosaccharomyces rouxii ZYRO0A04378g I 0.503
ZBAI_02112 Zygosaccharomyces bailii ZBAI_02112 I 0.503
TDEL_0D04120 Torulaspora delbrueckii TDEL_0D04120 I 0.500
G210_3517 Candida maltosa G210_3517 I 0.493
YALI0_D17996g Yarrowia lipolytica YALI0_D17996g N 0.472
CD36_81110 Candida dubliniensis CD36_81110 I 0.445
LELG_02079 Lodderomyces elongisporus LELG_02079 N 0.443
CTRG_02198 Candida tropicalis CTRG_02198 N 0.438
gwh1.8.1.855.1 Pichia stipitis gwh1.8.1.855.1 N 0.426
PICST_12709 Scheffersomyces stipitis PICST_12709 N 0.426