CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig482.3
(
Saccharomyces castellii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Scas_Contig482.3
T334959_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NHP10
M00068_2.00
Saccharomyces cerevisiae
TCCCCGGC
GCCGGGGA
PBM
Badis et al.(2008)
NHP10_2069
0.556
0.646
NHP10
M07496_2.00
Saccharomyces cerevisiae
YCCCCGGY
RCCGGGGR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1
0.556
0.646
NHP10
M08604_2.00
Saccharomyces cerevisiae
TCCCCGGY
RCCGGGGA
Misc
DeBoer et al.(2011)
YDL002C_502
0.556
0.646
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig482.3
Sox
102
166
PKRPTNAYLIFCELNKEDVRAKGSTDVTKDLSEMWKALDDEARKPYFDLYNEDRERYRSEMDVYN
Links
Other
Sox
family TFs
Other
Saccharomyces castellii
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy