CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00002710001
(
Oikopleura dioica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
SNAPOd2T00002710001
T335044_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.419
0.286
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.419
0.286
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.419
0.286
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00002710001
Sox
238
286
PSRPVSAYALFFRETQSLIKAQKPDATFGEISKIVASMWDALGDEEKTS
Links
Other
Sox
family TFs
Other
Oikopleura dioica
TFs
445 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy