CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chd3
(
Xenopus tropicalis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
XB-GENE-1008908
T335058_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI69169
Sox
192
237
TLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFK
XP_002940874
Sox
207
251
TLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPF
Links
Other
Sox
family TFs
Other
Xenopus tropicalis
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSOCUG00000023865
Oryctolagus cuniculus
ENSOCUG00000023865
N
0.735
CHD5
Macaca mulatta
ENSMMUG00000016838
N
0.735
CHD5
Gallus gallus
ENSGALG00000000747
N
0.722
ENSMEUG00000005852
Macropus eugenii
ENSMEUG00000005852
N
0.722
CHD3
Pteropus vampyrus
ENSPVAG00000016344
N
0.722
CHD5
Sus scrofa
ENSSSCG00000003366
N
0.722
CHD5
Echinops telfairi
ENSETEG00000004120
N
0.695
ENSMPUG00000008872
Mustela putorius furo
ENSMPUG00000008872
N
0.695
ENSTNIG00000004346
Tetraodon nigroviridis
ENSTNIG00000004346
N
0.679
chd3
Oryzias latipes
ENSORLG00000007107
N
0.673
chd4b
Danio rerio
ENSDARG00000025789
N
0.643
ENSAMEG00000017006
Ailuropoda melanoleuca
ENSAMEG00000017006
N
0.640
XP_002941963
Xenopus tropicalis
XP_002941963
N
0.550
ENSSHAG00000004107
Sarcophilus harrisii
ENSSHAG00000004107
N
0.550
CHD4
Microcebus murinus
ENSMICG00000006588
N
0.550
CHD4
Ochotona princeps
ENSOPRG00000003477
N
0.550
ENSMODG00000024829
Monodelphis domestica
ENSMODG00000024829
N
0.550
CHD4
Echinops telfairi
ENSETEG00000005912
N
0.550
ACEP22065
Atta cephalotes
ACEP22065
N
0.524
SINV11745
Solenopsis invicta
SINV11745
N
0.524
LDEC009474
Leptinotarsa decemlineata
LDEC009474
N
0.514
YQE_12532
Dendroctonus ponderosae
YQE_12532
N
0.498
PLICRDRAFT_179042
Plicaturopsis crispa
PLICRDRAFT_179042
I
0.469
MAPG_04417
Magnaporthe poae
MAPG_04417
N
0.454
KGM_21779
Danaus plexippus
KGM_21779
N
0.451
ACRE_034400
Acremonium chrysogenum
ACRE_034400
N
0.444
BGIBMGA002931
Bombyx mori
BGIBMGA002931
N
0.440
MCINX004608
Melitaea cinxia
MCINX004608
N
0.440
BOTBODRAFT_40635
Botryobasidium botryosum
BOTBODRAFT_40635
N
0.435
GK17504
Drosophila willistoni
FBgn0219503
N
0.434
MGG_00866
Magnaporthe oryzae
MGG_00866
N
0.432
BBA_10208
Beauveria bassiana
BBA_10208
N
0.431
GG13363
Drosophila erecta
FBgn0105635
N
0.426
GSTUM_00007488001
Tuber melanosporum
GSTUM_00007488001
N
0.425