XP_002941963 (Xenopus tropicalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 XP_002941963 T335128_2.00 Misc (2018-Jan-19)
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI because the model on which it was based was not predicted in a later annotation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002941963 Sox 155 199

Links

Other Sox family TFs
Other Xenopus tropicalis TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACEP22065 Atta cephalotes ACEP22065 N 0.482
BATDEDRAFT_7789 Batrachochytrium dendrobatidis BATDEDRAFT_7789 I 0.421
BGIBMGA002931 Bombyx mori BGIBMGA002931 N 0.501
CapteG224864 Capitella teleta CapteG224864 I 0.423
D917_07703 Trichinella nativa D917_07703 N 0.454
EFV51436 Trichinella spiralis EFV51436 N 0.454
EMIHUDRAFT_117867 Emiliania huxleyi EMIHUDRAFT_117867 I 0.423
ENSAMEG00000017006 Ailuropoda melanoleuca ENSAMEG00000017006 N 0.455
chd4b Danio rerio ENSDARG00000025789 N 0.629
CHD5 Echinops telfairi ENSETEG00000004120 N 0.550
CHD4 Echinops telfairi ENSETEG00000005912 N 0.741
CHD5 Gallus gallus ENSGALG00000000747 N 0.524
ENSMEUG00000005852 Macropus eugenii ENSMEUG00000005852 N 0.524
CHD4 Microcebus murinus ENSMICG00000006588 N 0.741
CHD5 Macaca mulatta ENSMMUG00000016838 N 0.556
ENSMODG00000024829 Monodelphis domestica ENSMODG00000024829 N 0.741
ENSMPUG00000008872 Mustela putorius furo ENSMPUG00000008872 N 0.585
ENSOCUG00000023865 Oryctolagus cuniculus ENSOCUG00000023865 N 0.556
CHD4 Ochotona princeps ENSOPRG00000003477 N 0.741
chd3 Oryzias latipes ENSORLG00000007107 N 0.599
CHD3 Pteropus vampyrus ENSPVAG00000016344 N 0.524
ENSSHAG00000004107 Sarcophilus harrisii ENSSHAG00000004107 N 0.741
CHD5 Sus scrofa ENSSSCG00000003366 N 0.524
ENSTNIG00000004346 Tetraodon nigroviridis ENSTNIG00000004346 N 0.605
estExt_fgenesh3_kg.C_170031 Heterobasidion annosum estExt_fgenesh3_kg.C_170031 I 0.467
GG13363 Drosophila erecta FBgn0105635 N 0.504
GK17504 Drosophila willistoni FBgn0219503 N 0.437
GALMADRAFT_215335 Galerina marginata GALMADRAFT_215335 I 0.430
GLOTRDRAFT_107384 Gloeophyllum trabeum GLOTRDRAFT_107384 I 0.471
GLYMA04G10125 Glycine max GLYMA04G10125 I 0.418
GLYMA08G39290 Glycine max GLYMA08G39290 I 0.418
GLYMA18G19720 Glycine max GLYMA18G19720 I 0.418
GSTUM_00007488001 Tuber melanosporum GSTUM_00007488001 N 0.459
HelroG66455 Helobdella robusta HelroG66455 N 0.423
HETIRDRAFT_439796 Heterobasidion irregulare HETIRDRAFT_439796 I 0.467
HHAL005242-PA Halyomorpha halys HHAL005242-PA I 0.434
K443DRAFT_674317 Laccaria amethystina K443DRAFT_674317 N 0.430
KGM_20190 Danaus plexippus KGM_20190 I 0.423
KGM_21779 Danaus plexippus KGM_21779 N 0.512
LACBIDRAFT_297819 Laccaria bicolor LACBIDRAFT_297819 N 0.430
LDEC009474 Leptinotarsa decemlineata LDEC009474 N 0.472
MCINX004608 Melitaea cinxia MCINX004608 N 0.501
MCINX012524 Melitaea cinxia MCINX012524 I 0.423
MDOA001488 Musca domestica MDOA001488 I 0.434
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.433
MYCTH_2308522 Myceliophthora thermophila MYCTH_2308522 I 0.421
NV13812 Nasonia vitripennis NV13812 I 0.423
PLEOSDRAFT_1090547 Pleurotus ostreatus PLEOSDRAFT_1090547 I 0.475
PLICRDRAFT_179042 Plicaturopsis crispa PLICRDRAFT_179042 I 0.499
POPTR_0008s19330 Populus trichocarpa POPTR_0008s19330 I 0.422
S40285_07156 Stachybotrys chlorohalonata S40285_07156 N 0.421
S40288_05696 Stachybotrys chartarum S40288_05696 N 0.421
SINV11745 Solenopsis invicta SINV11745 N 0.482
tetur18g00680 Tetranychus urticae tetur18g00680 I 0.424
W97_08209 Coniosporium apollinis W97_08209 N 0.415
chd3 Xenopus tropicalis XB-GENE-1008908 N 0.550
YQE_12532 Dendroctonus ponderosae YQE_12532 N 0.457