13553_YKL032C (Saccharomyces mikatae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 13553_YKL032C T335133_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IXR1
M08429_2.00 		Saccharomyces cerevisiae
CMCCGCTYCCGGYTT
AARCCGGRAGCGGKG		 ChIP-chip
Mathelier et al.(2014)
MA0323.1 		0.741 1.000
IXR1
M11345_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$IXR1_01 		0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13553_YKL032C Sox 359 427
13553_YKL032C Sox 432 498

Links

Other Sox family TFs
Other Saccharomyces mikatae TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
14658_YKL032C Saccharomyces bayanus 14658_YKL032C I 0.741
IXR1 Saccharomyces cerevisiae YKL032C D 0.741
SU7_2018 Saccharomyces arboricola SU7_2018 I 0.741
NDAI_0K01850 Naumovozyma dairenensis NDAI_0K01850 I 0.709
NCAS_0A04790 Naumovozyma castellii NCAS_0A04790 I 0.706
TDEL_0A03100 Torulaspora delbrueckii TDEL_0A03100 I 0.701
ZBAI_03824 Zygosaccharomyces bailii ZBAI_03824 I 0.700
ZBAI_09505 Zygosaccharomyces bailii ZBAI_09505 I 0.700
KNAG_0A07060 Kazachstania naganishii KNAG_0A07060 I 0.694
CAGL0L02013g Candida glabrata CAGL0L02013g I 0.692
ZYRO0B02068g Zygosaccharomyces rouxii ZYRO0B02068g I 0.688
KAFR_0J00330 Kazachstania africana KAFR_0J00330 I 0.685
TPHA_0G03540 Tetrapisispora phaffii TPHA_0G03540 I 0.680
Kpol_348p11 Vanderwaltozyma polyspora Kpol_348p11 I 0.680
TBLA_0G02260 Tetrapisispora blattae TBLA_0G02260 I 0.677
AACERI_AaceriAGL073CA Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL073CA I 0.639
AGOS_AGL073CA Ashbya gossypii AGOS_AGL073CA I 0.639
Ecym_7252 Eremothecium cymbalariae Ecym_7252 I 0.630
13606_Multiple Saccharomyces paradoxus 13606_Multiple I 0.623
Kwal_8043 Kluyveromyces waltii Kwal_8043 I 0.619
KLTH0D06908g Kluyveromyces thermotolerans KLTH0D06908g I 0.614
KLTH0D06908g Lachancea thermotolerans KLTH0D06908g I 0.614
LALA0_S02e01376g Lachancea lanzarotensis LALA0_S02e01376g I 0.608
KLLA0_E18481g Kluyveromyces lactis KLLA0_E18481g I 0.580
SAKL0A09548g Lachancea kluyveri SAKL0A09548g I 0.566