3225_YDL002C (Saccharomyces mikatae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 3225_YDL002C T335149_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NHP10
M00068_2.00
Saccharomyces cerevisiae
TCCCCGGC

GCCGGGGA
PBM
Badis et al.(2008)
NHP10_2069
0.741 1.000
NHP10
M07496_2.00
Saccharomyces cerevisiae
YCCCCGGY

RCCGGGGR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1
0.741 1.000
NHP10
M08604_2.00
Saccharomyces cerevisiae
TCCCCGGY

RCCGGGGA
Misc
DeBoer et al.(2011)
YDL002C_502
0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
3225_YDL002C Sox 94 158

Links

Other Sox family TFs
Other Saccharomyces mikatae TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NHP10 Saccharomyces cerevisiae YDL002C D 0.741
603_YDL002C Saccharomyces bayanus 603_YDL002C I 0.741
3735_YDL002C Saccharomyces paradoxus 3735_YDL002C I 0.741
SKUD_167206 Saccharomyces kudriavzevii SKUD_167206 I 0.733
KNAG_0K01480 Kazachstania naganishii KNAG_0K01480 I 0.673
KAFR_0F02510 Kazachstania africana KAFR_0F02510 I 0.662
CAGL0M10505g Candida glabrata CAGL0M10505g I 0.627
NDAI_0A07360 Naumovozyma dairenensis NDAI_0A07360 I 0.626
Kpol_1045p57 Vanderwaltozyma polyspora Kpol_1045p57 I 0.604
TBLA_0A00160 Tetrapisispora blattae TBLA_0A00160 I 0.584
TPHA_0P00560 Tetrapisispora phaffii TPHA_0P00560 I 0.563
Scas_Contig482.3 Saccharomyces castellii Scas_Contig482.3 I 0.556
NCAS_0A10110 Naumovozyma castellii NCAS_0A10110 I 0.556
ZBAI_07968 Zygosaccharomyces bailii ZBAI_07968 I 0.546
ZBAI_02112 Zygosaccharomyces bailii ZBAI_02112 I 0.546
TDEL_0D04120 Torulaspora delbrueckii TDEL_0D04120 I 0.544
ZYRO0A04378g Zygosaccharomyces rouxii ZYRO0A04378g I 0.539
G210_3517 Candida maltosa G210_3517 I 0.441
CD36_81110 Candida dubliniensis CD36_81110 I 0.419
Ecym_5292 Eremothecium cymbalariae Ecym_5292 I 0.417
AACERI_AaceriAEL005C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL005C I 0.417
LALA0_S09e06216g Lachancea lanzarotensis LALA0_S09e06216g I 0.415