3735_YDL002C (Saccharomyces paradoxus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 3735_YDL002C T335150_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP10
M00068_2.00 		Saccharomyces cerevisiae
TCCCCGGC
GCCGGGGA		 PBM
Badis et al.(2008)
NHP10_2069 		0.741 1.000
NHP10
M07496_2.00 		Saccharomyces cerevisiae
YCCCCGGY
RCCGGGGR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0344.1 		0.741 1.000
NHP10
M08604_2.00 		Saccharomyces cerevisiae
TCCCCGGY
RCCGGGGA		 Misc
DeBoer et al.(2011)
YDL002C_502 		0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
3735_YDL002C Sox 94 158

Links

Other Sox family TFs
Other Saccharomyces paradoxus TFs

Invalid Input OrderBy

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action